MmuEX0053583 @ mm10
Exon Skipping
Gene
ENSMUSG00000030469 | Zfp719
Description
zinc finger protein 719 [Source:MGI Symbol;Acc:MGI:2444708]
Coordinates
chr7:43584068-43586480:+
Coord C1 exon
chr7:43584068-43584296
Coord A exon
chr7:43585821-43585918
Coord C2 exon
chr7:43586354-43586480
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCACCTCCATCCTAGTTC
3' ss Score
6.68
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACCTCTGGGTGAGGCTAAGCCATTCATGCCGCCAATTTTCTCAACATAACCAAGTTGGCCTCTGCCCCACAACTCTACAAGAATCGTCCACATGCTGACCTATCTTCAGAATCCTGAGAAAATTAGAGAGAGACCAAGAGTAGAAACCACAGAGGACATGCCTACTGATATGAATTTCTGCCAGATGCCCCAGCAGTTGGGAGCAGAGGAGCAGGATGGATTGTGTGAG
Seq A exon
TTCCTCCATCCTAGAGTATGCTCGTCCACATCCCAATTCAAACGCCACACTTCCCGTCTAAGGGGCTGTACTCTCATTATCATGACAGCCATTCCCAG
Seq C2 exon
AGATTGGTGTCCTTTGATGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCCGCCCAGAGACGCCTGTACCAGGACGTGATGCTGGAGATCTACAGCCACCTCTTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030469_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.511 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSMUST00000058104fB4708
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCTGCCAGATGCCCCAG
R:
AGGTGGCTGTAGATCTCCAGC
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types