RnoEX0048396 @ rn6
Exon Skipping
Gene
ENSRNOG00000033729 | LOC102556967
Description
zinc finger protein 484-like [Source:RGD Symbol;Acc:7510716]
Coordinates
chr1:99499999-99507970:+
Coord C1 exon
chr1:99499999-99500720
Coord A exon
chr1:99505586-99505814
Coord C2 exon
chr1:99507844-99507970
Length
229 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTGATGTCTTTGCAGACC
3' ss Score
10.74
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AATAAAATACAGAAAAGGGTACATTTAGGAAGATGTAATGTTACGCTCTCAGAATTTTATACACTTACAAGGAGTAAATAAACCCTCCAGCAATGTGAGACAGACTTAGACTTTCACTACATCACATTCCACAGGCTTGCCTGTCTGTATGGAACTGAAGCACTTTGATGGTCGCCTCTGTGCCACTGGAGTGTGGGTGCAGTCATGGTACCAGACGAGCCATAATAAGTACTGGCAAGATTTACCTTCGGCAGTGGTAGCGCGCATGCGCGTCATGCATGCGGGCTACGTGGTAATGTACTGAGGGAACCCTTATTCAAATCGGAAGTGGCTTAGAGTGATCACATCCGCTCAGATCTTAAAGTAGTTCGCCTCTGCTGTCGTTGCCAGGGCAGCGTGGGTGTTTGGAATCCGAACCCTTGGAATTGTGGGTGTCTGTGGGCGGAAGTCTCGCATCCCTGGCGTGCCGTGTGCAGAGCTTCTCTAAGGTGCAGTGTGCG
Seq A exon
ACCTCTGGGTGAGGCCGAGTTATTCATACCTCCAATTTCCCCATCATAACCAAGCTGGCCTCTGCCCCGCAACTCTACGTGGATCCTCCACATGCTGACCTATCTTCAGAATCCTGAGGAAGTCAGAGACAGACCAAGACTGGAAACCACGGAGGACATGCCTACCGACATGAATTTCTGCCAGATGCCCCAGAGATTGGGAGCAGAGGAGCAGGATGGACCGTGTGAG
Seq C2 exon
AGATTGGTGTCCTTTGATGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCTGCCCAGAGATGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033729_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.565 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCTACGTGGTAATGTAC
R:
GTACAGGCATCTCTGGGCAGA
Band lengths:
304-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]