RnoEX0048395 @ rn6
Exon Skipping
Gene
ENSRNOG00000033729 | LOC102556967
Description
zinc finger protein 484-like [Source:RGD Symbol;Acc:7510716]
Coordinates
chr1:99499999-99505814:+
Coord C1 exon
chr1:99499999-99500720
Coord A exon
chr1:99503254-99503362
Coord C2 exon
chr1:99505586-99505814
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTCTACCATGTATGTCCCAGGTA
3' ss Score
7.03
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATAAAATACAGAAAAGGGTACATTTAGGAAGATGTAATGTTACGCTCTCAGAATTTTATACACTTACAAGGAGTAAATAAACCCTCCAGCAATGTGAGACAGACTTAGACTTTCACTACATCACATTCCACAGGCTTGCCTGTCTGTATGGAACTGAAGCACTTTGATGGTCGCCTCTGTGCCACTGGAGTGTGGGTGCAGTCATGGTACCAGACGAGCCATAATAAGTACTGGCAAGATTTACCTTCGGCAGTGGTAGCGCGCATGCGCGTCATGCATGCGGGCTACGTGGTAATGTACTGAGGGAACCCTTATTCAAATCGGAAGTGGCTTAGAGTGATCACATCCGCTCAGATCTTAAAGTAGTTCGCCTCTGCTGTCGTTGCCAGGGCAGCGTGGGTGTTTGGAATCCGAACCCTTGGAATTGTGGGTGTCTGTGGGCGGAAGTCTCGCATCCCTGGCGTGCCGTGTGCAGAGCTTCTCTAAGGTGCAGTGTGCG
Seq A exon
GTATCGAACTCAGGTTGTCAGGCTTGTTGGCAAGCACCTTTTCCCTCTGAGGCAGCGGTTCTCAACCTTCCTAATGCTGTGACACGTCAATGTAATTCCTCATGTTGTG
Seq C2 exon
ACCTCTGGGTGAGGCCGAGTTATTCATACCTCCAATTTCCCCATCATAACCAAGCTGGCCTCTGCCCCGCAACTCTACGTGGATCCTCCACATGCTGACCTATCTTCAGAATCCTGAGGAAGTCAGAGACAGACCAAGACTGGAAACCACGGAGGACATGCCTACCGACATGAATTTCTGCCAGATGCCCCAGAGATTGGGAGCAGAGGAGCAGGATGGACCGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033729_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.565
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCTACGTGGTAATGTAC
R:
AATAACTCGGCCTCACCCAGA
Band lengths:
244-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]