RnoINT0082184 @ rn6
Intron Retention
Gene
ENSRNOG00000033729 | LOC102556967
Description
zinc finger protein 484-like [Source:RGD Symbol;Acc:7510716]
Coordinates
chr1:99505677-99507970:+
Coord C1 exon
chr1:99505677-99505814
Coord A exon
chr1:99505815-99507843
Coord C2 exon
chr1:99507844-99507970
Length
2029 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CAATGAGTATGTTGTTACAGAGA
3' ss Score
2.75
Exon sequences
Seq C1 exon
ATGCTGACCTATCTTCAGAATCCTGAGGAAGTCAGAGACAGACCAAGACTGGAAACCACGGAGGACATGCCTACCGACATGAATTTCTGCCAGATGCCCCAGAGATTGGGAGCAGAGGAGCAGGATGGACCGTGTGAG
Seq A exon
GTGAGGAGAGATGCCCCAAGTTCAACTTTCCCTAGCTAGACGGCAGACACTGGAAGCAGAAGATTTGGACGCAACCCTGATTCTCCAGCTGAGAGTGCAGCACAGAGGGTGAAACCCCAGCATTTCCTCATCTTTTCGTGACGCGTTCATTGTGCTGCTTCTTGGATTTAGATTTATCTGCCCATCTATGACTCCCTGGGGAGTCCCGTTCCTATTCAACCCAAAGGACTGGCAGGACAAAAATGGGAGGTGCATCCAAGCCTAGCTTGGTGAAGCAGAGATTTCTTTTTATATACATATGTTAATTATGGTAGCATGTGCGGAGTGCAGCCATCTGGGGGTGGGGTCCTTGGGCAGCTGCCTCACCAAAACCTGTCACTGCCTTCCCCTAGCTGTGTATCCAGCTTACACATTTATGTAACATGAAGGCGTGGCATCTAGAACCTCTCCTCCCTTCCTCCAGAAGGGAATGGTTCAATGCCAAGGTAACAGCTACATAGCTATTACCACACATGGGTACAAGTCCCTGAGTCTTTGGATTTTTCTCTCCCAGTTCATAGATACACATTGGCTCCTCAAGGCTGACTAATTTAATATATATGTATTATATGCACACACATTATTTTATGTGTGTGGATGTTTTGCCTGCTTATATAGCTGTGTACCATGCGCATACAGTTCTCACAGAGGCCAGAAGAGGGCATTGAATACCCTGGAACTGGAATTAACAGGCAGGTTGTGAACTGCCATGTGCGTGTTGGGAATTGAACCCAGATCTCTGGAAGCCGGTGCTCTTAGCTGAGCCCTCTCTTTAGTCCGAAGCTGAGTATCTTAAAATAATAATTTGGATCTGTCGGGCTAAATAAAATGTGCTATTGAGTTGATTTCATCTGCGTGTAATTATTATGGCTGATGGAAATCGGAGATGACTTCGTGGCTCCCATTGCTTGTGTGTTGGAGATCTCTGCTCTGGAGAATGATCACATTCTGGTTTGATTTTATTCTTGCAGTATGCTTCACAGTGGTGGCTTGCACTGTTGTATCCTGCCATCATGCAGGTCATCTCTCTCCTGTGATGCTAAGTCATACCTGGCAGCGCTTCTCGTGTGTAGTTTAGCAGCCATTTTCGAAGAGGAAAGTTCTGTAGAAGTAACTGCCCTTCAGAAGGTTTCATTTATGTCTTAGGTGCTGCCAAAGGCAGGTCCTTTTACCATCATGTCTTTGAGCGACACGCACTGAATGCAATAAAACCAGCCTTTCACGTTTGAAGGTCTTCATGTCCCTGCAATTAATTACTTAAGCGACAATCCATGACTCAAAATTGAAAACTCCATACCCTTTTCGTCAACCCACCAAGTACCTCCTTGTGATTCAGATGACAAATAGTTTCTAGGCATTATAGCTGTTACTGTCTCCTCCTACTCAGAGCTCTCTGCCCCTCCATGAAACTGTGGCTTTTCTTACCGTCATTCACCTTCATCCCAGTTCTCCTCTAGAATATGCTATTCCACGTTCCCATTCAAACTTCTCACTTCCAATCTAAGTTGCTCTGCTCTGATTAGCAACAGACATTGCTAATTAGAAAATTAGCATCATGACAGGTAAGTGTCTTAACTCACTCTTCCCAACAATTTGCTTTGTATATTTGTCTAAAAATACTCCTTTATAGCCCCATACTTGAGTCTTTATATTTGCTACTTGGCAATTCTGAGCTTCTTTAAGAGTAAAACTCATACAGTGTTGACTCCCAGGGACCCAGCACAGATATGGACGATGTGACTGAATAACTGTCATGCTGTTTAATCTTTGAGAGAGAATGAGAAAGAATCCATTTCTGGCCTGCTGGTGAGGGGATGATAGTATTTATTAGGTGGTGAGTTTATGTTTATTTATATATATATATATCATTTTCCTTTATGCTCCAAAGTACAATGGGAAATAGGTGTTTTGTAGAAAGCTTAAAGCTTCATTTAAGGGGTGGGGGGTAACTGGAAACACATGTTAATTCACAATGAGTATGTTGTTACAG
Seq C2 exon
AGATTGGTGTCCTTTGATGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCTGCCCAGAGATGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033729:ENSRNOT00000024645:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]