MmuEX0053539 @ mm10
Exon Skipping
Gene
ENSMUSG00000056592 | Zfp658
Description
zinc finger protein 658 [Source:MGI Symbol;Acc:MGI:2652821]
Coordinates
chr7:43562256-43567394:+
Coord C1 exon
chr7:43562256-43562421
Coord A exon
chr7:43564614-43564843
Coord C2 exon
chr7:43567268-43567394
Length
230 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTGCTGTCTCTTTAGGTC
3' ss Score
11.74
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTGGTCTCGAGCGGTCATATCCGCTTAAATCTCCGCGCAGATCAGTTCTGTTATTGTTGCCCGCACTCCAGGAGAGTTTGGATTCTAACACTGAGGGCCCGGGGGCGGAAGTCGCAGGGAGGGACACTGCGCGTCCTGTGCAGAGTTCTCTGCATTGTTGTGAGAG
Seq A exon
GTCAAAGGCAGGCCACATCAGCCAGGCTGGGGGATTTTTCTACCTCACCACAGCTGGCCTCTCTGCTCAGCTGCTCTCCTGGGAACCTCTAGCCACTCAACCAGCTTCCAGTTCCTGAGAAAAATTGCATCTGCCAGCAAAGAGGCAAGAGAGGAAACATACCTGCTGACATGAAATTGTCCCAGAAGGCCCAGAGACTGCACCCACAGGAGCAGGAAGGGTCCCGTGAG
Seq C2 exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCGACGCCTGGACTCCGTCCAGAGACACCTGTACCAGGACGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056592_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.800 C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCTCGAGCGGTCATATC
R:
AGAGGTGGCTGTAGATCTCCA
Band lengths:
284-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types