RnoEX0101709 @ rn6
Exon Skipping
Gene
ENSRNOG00000030160 | Zfp819
Description
zinc finger protein 819 [Source:RGD Symbol;Acc:1309564]
Coordinates
chr1:99528270-99533851:+
Coord C1 exon
chr1:99528270-99528803
Coord A exon
chr1:99532444-99532639
Coord C2 exon
chr1:99533725-99533851
Length
196 bp
Sequences
Splice sites
3' ss Seq
ACTTTCCGGTGTCTTCGTAGATT
3' ss Score
9.92
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACGGAGAAAAGTTTTAGGAATATACAATATATCTGTCTCTTAAATGCGAGTCTACCCAAGGAGCTTCAGACTTTTATTCTGTGACACTCCACATGGTCCATGGATGTATGGAAGTGAATTATTCTGATGATGTCTTCCGCATAATTGAAATATGGACATGGCCATTACAATATGGGGCTGGGGCGTGGCGCGTGGGGGTGGTGGGGGCACAGTTTACACCATTATAACTATTGGCAAAGAGTAATTTCACACGTGGTTGGTGGGCATGCGCAACACAACTTTTGTGCTTGCAAGCAATAGGGGCTATAGGGAATACCGACTTCCGCCGGAAAAGTTCATTTTAACCAGAAGTGTCCTAGAGCGTCGATTTCCGCTTAGATCTTCACGTGGTTGGTTGTTATCGTTACCAGGACGCCGAGGGAGTTTGGATTCTGAACACCGGGGAATCCTAGCGTCTACCCGGGTGTGCCGTGTGCAGAGCTTTCTGAGTGCAGTGTGAG
Seq A exon
ATTCCTGGGTCAGGCCAAGTCCTTCATGCTGCTGATTTTCTGACAAAACGCAGCTGAGTTCCGCCCGTCAGCTCTACTCAAAGGCTCCTCATGCTCACCCGAATCCTGAGGAAATCCAGACGACATGGCCGCTGACGTGAATTTCTGTCAGAAGTCCCAGAGACTGGGAACAGAGGAGCAGGATGGGTCATGTGAG
Seq C2 exon
AGGTTGGTGTCCTTTGAGGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCTGCCCAGAGATGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030160_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTAGAGCGTCGATTTCCG
R:
CTCCAGCATCACCTCCTGGTA
Band lengths:
250-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]