MmuALTD0016265-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000044296 | Zfp879
Description
zinc finger protein 879 [Source:MGI Symbol;Acc:MGI:3053099]
Coordinates
chr11:50832031-50838005:-
Coord C1 exon
chr11:50837922-50838005
Coord A exon
chr11:50837910-50837921
Coord C2 exon
chr11:50832031-50833971
Length
12 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
TTATGTTTTGTTTAATTTAGGAT
3' ss Score
10.65
Exon sequences
Seq C1 exon
GGATCCTGTTTTCCAAGCCAAAGGTCATCGCTCAGTTAGAACAAGCAGAAGACTTCCCGATGGTGGAAAGTGGGATGTTTCAAG
Seq A exon
GTGTGTACCTCG
Seq C2 exon
GATGGAAGAGCTTGTTTGAGCCCATAGTTTCCAAAGAAGAAAATAAGAAAGTCTTGAAAAACCAGAGAGTGGATAAATTTTTTAACTTCATATTGGGAAAAACGTGTGTAAATGAGGAACAGTTAGAGGAGCAACCAGGCAATAAGAAAAACCCTTTCAGCGAGATGCTGCTTTCTGTCAGAAGAGGCTGTAGACAAGAGCGAGGCTTTCCAGGGGTCGGACTCGTGAGAAATCCCGGCATAAAGCTCCCATTTCGTAGGAAACCTGGAGTTGCCGCCGGAGGGGGAAAGCCCCACTTACAGCAGTACTCAGTTCTGTTCAAACAACTGGGATTCAACCGAGCCCGCCAGCTTTGTAAATGCAACATCTGTGGGAAAGTCTTCTTCCACAGTTCCTCCCTGAGCAAGCATCAGAGGACTCACACTGGAGAGAAGCTCTACAAATGTCAGGGCTGTCGGAAAGCTTTCAGCCAACGCTCATCCCTGGCACAGCACCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044296-5-5,6-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAAAGGTCATCGCTCAG
R:
GGGCTCAAACAAGCTCTTCCA
Band lengths:
93-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types