Special

MmuALTD0016265-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000044296 | Zfp879
Description
zinc figer protein 879 [Source:MGI Symbol;Acc:MGI:3053099]
Coordinates
chr11:50645533-50651507:-
Coord C1 exon
chr11:50651424-50651507
Coord A exon
chr11:50651412-50651423
Coord C2 exon
chr11:50645533-50647473
Length
12 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
TTATGTTTTGTTTAATTTAGGAT
3' ss Score
10.65
Exon sequences
Seq C1 exon
GGATCCTGTTTTCCAAGCCAAAGGTCATCGCTCAGTTAGAACAAGCAGAAGACTTCCCGATGGTGGAAAGTGGGATGTTTCAAG
Seq A exon
GTGTGTACCTCG
Seq C2 exon
GATGGAAGAGCTTGTTTGAGCCCATAGTTTCCAAAGAAGAAAATAAGAAAGTCTTGAAAAACCAGAGAGTGGATAAATTTTTTAACTTCATATTGGGAAAAACGTGTGTAAATGAGGAACAGTTAGAGGAGCAACCAGGCAATAAGAAAAACCCTTTCAGCGAGATGCTGCTTTCTGTCAGAAGAGGCTGTAGACAAGAGCGAGGCTTTCCAGGGGTCGGACTCGTGAGAAATCCCGGCATAAAGCTCCCATTTCGTAGGAAACCTGGAGTTGCCGCCGGAGGGGGAAAGCCCCACTTACAGCAGTACTCAGTTCTGTTCAAACAACTGGGATTCAACCGAGCCCGCCAGCTTTGTAAATGCAACATCTGTGGGAAAGTCTTCTTCCACAGTTCCTCCCTGAGCAAGCATCAGAGGACTCACACTGGAGAGAAGCTCTACAAATGTCAGGGCTGTCGGAAAGCTTTCAGCCAACGCTCATCCCTGGCACAGCACCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044296-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.068
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000061782





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000104761, ENSMUSP00000104762, ENSMUSP00000127032
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr5:178455129-178455130 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr7:2252174-2252175 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AAGCCAAAGGTCATCGCTCAG

				
R: 
GGGCTCAAACAAGCTCTTCCA

				
Band lengths: 
93-105

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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