Special

MmuINT0180029 @ mm9

Intron Retention

Gene
ENSMUSG00000044296 | Zfp879
Description
zinc figer protein 879 [Source:MGI Symbol;Acc:MGI:3053099]
Coordinates
chr11:50645537-50651507:-
Coord C1 exon
chr11:50651412-50651507
Coord A exon
chr11:50647474-50651411
Coord C2 exon
chr11:50645537-50647473
Length
3938 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
TTATGTTTTGTTTAATTTAGGAT
3' ss Score
10.65
Exon sequences
Seq C1 exon
GGATCCTGTTTTCCAAGCCAAAGGTCATCGCTCAGTTAGAACAAGCAGAAGACTTCCCGATGGTGGAAAGTGGGATGTTTCAAGGTGTGTACCTCG
Seq A exon
GTAAGTGTCAGGAGGCGTGGGACTTGAACCTGGCACTGCCTGGGCACATTAAGGGGATTATGTTCGGAGGACTCCGGCTAGGGGCGTCCTTTGATGTGCCAGCACATGGGGTTGCTGGCAAGGGCACGTTCAGAGGGAGAGGTGAATTGTCCAAGCACAGGTTGTACTTTGTCAAATGCCTCCATGTTGTCATTTGAAAGCATGTGCTGCCATGTGATGTGTGTTGAATGTTTATCATGCTTGATCCTTCTACTGTTCCTTCAACTCATTTTACTTCAGTGGTTTGCACATAGCTTTCATGACTGTGGTGCATCCCCTGTTCCAGCTTGCAAACACATTATTAAATGACCTCACAGTACCCAAAATGTGTTAGTGTCACAGTAAGGGAAATAAATCAGAGGACTTCCCCTTGCAGTCGTTTTACCAAAACCAAGCCCAGATTGAGTTCTCTACTTCTTTCTCCCCATGTCTTCCACCTCTCCCTTCTGTAGTTTGTCTGTTGTGTGAATCTAAATCTGTGTCTGCCTGAATACTCTCTTATGAATTTGTCACTGTGCCCGTGAGAGTCCCTAACAAAGGGCTTTGAAGCCATAGTTGCTTAATCTGCTCTAATCCCCCTGGCAGTGGGGGTGTGCATGCTCCTCAATACCTGCCCAGATGTTTTAAATCCAAGAATAAAAGACAGACAGACAGACAGACACACACACTTTTAATATGTCTTGAACAGTGCAATGGCTGGGGACTTCTTTGTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGACATGCGCCACCACTGCCCGGCTTGGCTGGGGACTTCTAAACCTCTCTGTGGCTAACATACTCTCCCTTCCAATATTCCTGAATTATTACTCACTAAAACCTGTTTTTCTCTTCTGGCCACCATGGACCTAGGCCTGTAACCCTCTTGGGCCATGACCCCCGACTCTTTCATCTTGGAAGTGTGTCTCTGTCTCTCTCCTCCACTTCTCAGCCTAGGACCTTCTCCTCTCTGGCAATGGTGATTTTCTTCCTCCTCTTTTGAATTCCCATGCAATTTGGGAACCCAATTAACCTAATATAAACAATAAACTAAATCTACAACAGAGTGTTAGCTCTGCACTTATTGAATATCACAGGAATATGAGAAAAGAATGAGGGATATTTTACAGAAATCTTTAACAGAGTTTTACAAGGGATAAAGCTTTACTAACTCCAACTGACCCAGATGACAGACCAGTGCTATCATGTGACACCTGAGTGCTGCTTTGGACTCGGTGGCAGGCATTTATTTTATAAGGTTGTTCTTCAACCTATTGTTTTCCTTTCTACAAGTGACTACCACATCATGCATTGCTCTCTGGGTCAGGGGCATGGGATTAGACTAAAATTATATATTAGCTTAGGTTTTAAAAGTTGGTTGCATGGAAAACCCAAGGCAAGTAAGGACAGTTGTTACACTGTTCTTGGAAAGTCAGGCCAGGCTAAACAAGCAGGCTAAGCCCATGAGTGATCTCTAGGTGTCTTAGTTAACACTGGCCATGAGGTCCAACAGAAGTTCCAGTGCTTTTCGCCGTAAGAGGTTTTCATAATAATGTATCCCATTCTGTCATGGGCTTTTGAATTTTTTGTCTGCAACTCAATATTCATTGTTAAGAACAACAAAATATATGCATATGTAAATACACGGCAATGTAGGTGTGCCAAAATGGCGACAGTATAGAATTTAAGCAGGTTCGCAGATACTTACCAAGCCATTCTTGACTGTGACATTTGCAAGCCATATATAGCAGATATATGGTTCCTGGTATCTACAGCTGAGTTTGTTAGACTCTGGTTGCCGTATTGTAAGTGCCCACTTCCTGTTTTGCTTTGGATTTTGTCTTTGTTTCTGGTACCAGAGGTTGATTCTCTTGGGCTCAGTGGTTTACCCAGAATTCACTCTGTTCTGGCAGTAGCTGGGCATTCTGAGTCAGTTTCGTCTTGGGTTGTCATTCATGAACTGTCTTTAGATTTTTCCTTTGTTTTGATGGGGATATTTTCTATCAATAATTTTTTTCAGCATTTATGTGTATAACATATGTATATGTTTAAGTCCTTTCTCTTCTCCTTTAGACATGGGTTTTACAGTAGAATTCTGACATTAGATTTCTTTTTCCCTATCAATAGCATCCACACTTGGCTCCACTCTACTGTCTTTGAGCAGTGAGTGTTGATAACAAGCCCTCTGTCTGATTCTATATCTCAGTTTTTTCTATATTGGTAACTTCTTTTATAATCATGAGGATGAATGCTCTTTTATAAAATATATTCATTTTTTTGAATCAATGATTTCATTTCTTATAGTGTATCCTTGCTATCCTGGCTCTTATATAGATTTTATCTGTTTTTTTTACATTAGTTTATTTTGTGCAGGGATAGTTGGGGGATGAGCCATAGCATGAGTGTGGAGCTCAGAGGACAGCTTTCAGGCATTGTTGCTCTTGAGTCTAAGACTGAACTAAGTTGTTGTAGGCAGCATGATCCCCATCCAGCCATCTGGGGCCCTAGATTTTATCTTCAACTTCATTATCTTACCACTCAGTTTAAATATCAGTATAGTTACCTCCACTACATATTGCTTTGGTTTTGTTTGTTCTCATATGCTTTTCATAAGGCCATGGTTACCCCTTCAGCAATTTGGTTATGTGGCTACTGAATGAAGAGTTTGCTTTTGCCTGGGTAGTCCCTGTAATTCCCAGAGCATTGGCCTCTGCTCGTTCTATTGAGGGAAGGCACATTATAACATTTACACACTGACAAGGGCCAGAGTGGCACTGCTGAGACTGACACTGCTTCACAGAGTTCTTGGGGCAAGGGCAACTCCCCTCCTCCCTTTCTCTTCTTCCTCCCTGCTGATTGCTTTTGGGATTAACCTGAGTATACTGGCCCCTGACCTGGGTGATGAATTGAATAGTAACCTAAGCTGTGCTTAGAAACCTGAGGCTTTTTTGCTAAATCAAGACTGGCACCCTTTCCTACTGTTAGAGCTGCCATCTGATGTCCTCATGTCCTCAGCCCACTTTCACACACACACACACACACACACACACACACACAGACATACAGGCACACACAGACACACAGGCACACACAGGCACACAGGCACACACACACACACACAGACATACAGGCACACACACAGACAGACAGACAGACATAGACACATGCACACACACAGACACACACACACAGAGACATACAGGTACACACAGACACATAGGCACACACAGACACATACAGGCACACACAGACAGACATACATAGACACAAGCACACACACACACAGACATACAGGCACACACAGACACACAGGCACACACAGACACACAGGCACACACACACACAGAGACATACATAGACACACACACAGACATACAGGCACACACACACACAGACACACACACACAGAGACATACAGGTACACACAGACACGTAGGCACACACAGGCACACACAGACAGACATACATAGACACAAGCACACACACACACACACACAGACATACAGGCACACACAGACACACAGGCACACACACACAGACACACACACAGGTAGACAGACATAGACACGCGCGCACACACACACACACACACACAAGTTTCTTCAGCTCTTTCCTTTCAGGCATGTCTACCCTCCTCTATTTCCTTTCCCTTGTCCTTGTCCTAACCTTTCATTAGATTTTGAGTTTGGGTTTGTTAGCTGTGTCATGTGATTTTTGAGTTTGGATTTGCTAACCGTGTTACATGATTTTACATTATTTTCCTTTATTCTCTGTGCAAGAGTTGCTTATGTTTTGTTTAATTTAG
Seq C2 exon
GATGGAAGAGCTTGTTTGAGCCCATAGTTTCCAAAGAAGAAAATAAGAAAGTCTTGAAAAACCAGAGAGTGGATAAATTTTTTAACTTCATATTGGGAAAAACGTGTGTAAATGAGGAACAGTTAGAGGAGCAACCAGGCAATAAGAAAAACCCTTTCAGCGAGATGCTGCTTTCTGTCAGAAGAGGCTGTAGACAAGAGCGAGGCTTTCCAGGGGTCGGACTCGTGAGAAATCCCGGCATAAAGCTCCCATTTCGTAGGAAACCTGGAGTTGCCGCCGGAGGGGGAAAGCCCCACTTACAGCAGTACTCAGTTCTGTTCAAACAACTGGGATTCAACCGAGCCCGCCAGCTTTGTAAATGCAACATCTGTGGGAAAGTCTTCTTCCACAGTTCCTCCCTGAGCAAGCATCAGAGGACTCACACTGGAGAGAAGCTCTACAAATGTCAGGGCTGTCGGAAAGCTTTCAGCCAACGCTCATCCCTGGCACAGCACCTGAGAGTCCATACTGGGGAAAAGCCGTACCTCTGTAGTGACTGTGGGAAGGCCTTCAGCTTCACCACCTCTCTCATTGGGCATCAGAGGATGCACACTGGAGAGAGACCCTATGAATGTAAGGAATGTGGCAAGACCTTCAAAGGCAGCTCCTCCCTTCATAATCACCAACGGATCCACACTGGAGAAAAGCCTTATAAGTGTAACGAGTGTGGGAGAGCCTTTAGCCAGTGCTCATCTCTGATTCAGCACCATAGGATTCACACTGGGGAGAAACCATATGAATGCAGCCAGTGTGGGAAGGCCTTTACATCAATATCACGGCTGAGCAGACACCACCGCGTCCATACCGGAGAGAAGCCCTTTCACTGTAATGTGTGTGGCAAAGTGTTCAGTTACCACTCGGCCTTGACCATCCATCAGAGAACTCACACTGGAGAGAAACCATATGCATGCAAGGAATGTGGGAAAGCCTTCAGCCAAAGCTCAGCACTTACCCAACATCAAAGAATCCACACTGGAGAAAAGCCGTACAAGTGTGCCGAATGCGGAAAGGCCTTTTCCTGGCTCTCACGGCTTAACATCCACCACAGGATCCACACGGGGGAGAAACCGTATCACTGTAAAGAGTGTGGGAAAGCCTTCAGTTCCCACTCTGCGGTCAATACGCACAGAAAGATCCACACTGGTGAGAAACCTTATAAATGCAGTGACTGTGAAAAAGCCTTCAATCAAAGCTCGGCCCTTATTCAGCATCAGAGAATCCACACCGGAGAGAAGCCGTTTAACTGTAAAGTTTGTGGGAAAGCCTTCCGACAGAGTTCCTCGCTTATGACACATATGAGGATCCACACAGGAGAAAGGCCGTACAGATGCGAAGCTTGCGGGAAAGCGTTCAGTCAGAGCTCATCTCTTGCCAACCACCAGAAGACACATTACTGAGAAAAACCATAGAAGTAAAATGCATGCATGCGGTAGATCTGCCTTGAGACATTCCTTCTCCGCTGACTGTAACAGAATTCATCTGGAGAGTGATGAGTAGCAGTTAGTCGGGGCTGAGCATGAAGTTAGATTTCAGCAAACATCAGGCATTTGTGATGCAGTATAAACTTGTGAGTGTTGGGAAAACTTACATAGAATATTTGGAAATGTTACATCGTATGTGGATTCTTTGAAGTTTCACTGATGGTGGAGTTGACACTGAGATTGAAAGATTAATATTTTCTTTCTAGTGATGCAGACTTAATAGCCACCAGCTTTTTTTTAACATCACTGCTGATTTAGGTAGAAGTGCATACTTGAGACCAGTCTAGGATCTGTGTTGTCTGCCTTTGAGTGTGAGTGCAAAATAGCTGAATTAGAAAACACGAGAAAAGAAGTCTGCGTGGGTAACGCACAGCTGCTTCAGGGTCATTTCACTAAAGTGTGTTTTCTAATACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044296-Zfp879:NM_173387:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.068
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000061782





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000104761, ENSMUSP00000104762, ENSMUSP00000127032
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr5:179028128-179032204 
ALTERNATIVE
HsaINT0188579
(ZNF879)
Human
(hg19)
chr5:178455129-178459205 
LOW PSI
HsaINT0188579
(ZNF879)
Rat
(rn6)
chr10:36328516-36332733 
ALTERNATIVE
RnoINT0168731
(Zfp879)
Cow
(bosTau6)
chr7:2243078-2252175 
BtaINT0166177
(ZNF879)
Chicken
(galGal4)
chr18:31475-31583 
ALTERNATIVE
GgaINT1030522
(ZNF302)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"