BtaINT0166177 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038541 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr7:2251911-2252271:-
Coord C1 exon
chr7:2252176-2252271
Coord A exon
chr7:2251991-2252175
Coord C2 exon
chr7:2251911-2251990
Length
185 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTTTGAGTACTTGGTATAGCAG
3' ss Score
-0.99
Exon sequences
Seq C1 exon
GGATTCTGTTTTCCAAACCAAAAGTTATCCTCCGGTTAGAACAAGGGGAAGACCCCTGGATGGTGGAAAATGGAGTTTCTCAAAGCACATATCTAG
Seq A exon
GTGAGTGACAGTAATTGGGAAATGGGCATAGCATTTCCGAGCTGCTTGGGCTTTGCTGATCGGTAAGGAGGAGATACTGGCCATGCTTGGGAGATACTGACCAAGATGCTCCTTATGTTTCAGGATAGGTGGGAAATGCTGGGAAGGGCATATCGTCACTCGACCTTTTTGAGTACTTGGTATAG
Seq C2 exon
CAGGCTCAGAGGGAGAGTTGAATTCTTCCAGTATGAGTTGTACTTTGTCATATGTCCTTTGTAATTTGAATGCAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038541:ENSBTAT00000005584:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTGTTTTCCAAACCAAAAGT
R:
GCTCTGCATTCAAATTACAAAGGACA
Band lengths:
174-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]