HsaINT0188579 @ hg38
Intron Retention
Gene
ENSG00000234284 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr5:179028032-179035064:+
Coord C1 exon
chr5:179028032-179028127
Coord A exon
chr5:179028128-179032204
Coord C2 exon
chr5:179032205-179035064
Length
4077 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATATGTTTTGTCTACTTTAGGAT
3' ss Score
11.68
Exon sequences
Seq C1 exon
GGATTCTCTTTTCCAAGCCAAAGGTCATCTCCCAGTTAGAGCAAGGAGAAGACCCCTGGATGGTGGAGAGTGGAGTTCCCCAAGGCGCACATCTCG
Seq A exon
GTGAGTGACAGAGTAATTGGGAGATGGGCATAACATTTTCCCACTGCCAGGGCACAGCGAGGAGGCTGCGCTCAAGGGTCTCCTTGATGTGCCAGGCCAGGGGGAAATGCTGGGAAGGTAGATCCTTTCTCTTTTGATTACTTGATCCATCATGTTCAGAGGAGGGTTGAATTCTCCCAATATGGGTTGCACTGTTTTCAGATATCTTGTAATTTGCAGAATATGTAATACAGTATATCATGTGTAAAGGTTTATAATTCTTTTATCTTCCTTTATCCTTGCTTTTACTGGATTGATTCTTTTCCTAAATTATTTTCCTTAGTGGCTTGAACATTACATTGTTTTTTTTTAATCACTACAATACATTCCTCATAGTTTCATCTTGGAACCATCTTTTGCTTTGATTTCTTTGGTGTACAACTTAATTATACATGGTTCAAAAGGGGGAAAAAAGCAGATATATGTGTATGTATTTACATACATGAAAGAGGGAAAGAAGGTGTGACAAACGGTAACAGTTACGGAATGTGAGTGGGCTTCCGGATACTCATCACGCTATTCTTCTCTTTTCTGTGAAAATTTAGAAAATAATGCATCCCAGATCCCAGCTCCTAAGGCATGTCACTTTTTCCCTATACGCCCTTGGATGACTGCATTATCAGCTTCCGCATTCATTCTCCTGTGAATTCTGTCTATGCTTCTGGCAGTAGAGGAGGCCTCTGTTGAGCTTTACCACGTGTCTGGTGTTTTTTTCTCACCTGGGCAGGGCGTGGGCTTTCTGGGCCAGTTCACTTTTGCGTTTCCATTCGTGAACTCTGTCTTCACATTTTTCCCTTTGGCTCGACTAGAATATTTTCTTGGGTAACGGTTTTCAAAAAAGGTTCATGTGTGCAATATCTGTACGTGTCAAAAATCAGTTGTTTTTTTCTCTCCTCTGAGATTTGTTGTTTTGGATCTAGAATTCTGGCATCTGTTTTTTTTTTTTTTTTTCCTCTCTGCATTGTCCAAACTGCTCCACTGTCTTTGGGCATGGAGTGCTGCTGACAAATAATCCCATTAGTCAGATTCTATTTCCTGTATAGGTAACTTGTTTTTTCTTTTCTGTCTTCTCTTTGGAATCTTACAGGACATCATCTTTATCTTTGGAATTCAGACTTTTCATTAGGTTATATGAAAGAGTATTTTTTTTTCTTTGTTCTTTGGCACTTTACTGGCCTCTTTGCTTTGAAGATTCAGTCCTTCCTTTCATTTCAGGGATCTTTTGTTTCTGCCACATTCCACCAACAATGTGAGGCAATTGACTGCAAGAGTAGTGATACAATAAAATAGAAATTCAATCAGACATCTAGAAAATAAATAGATCTGTAGTAAGGACCAGAATGGTAGCTATAAATGAGTTTCAAATTTCGCTCTGAGCTTTCTGGTTGGCAAATAAATCATTGGTATCACATTGTCAGTGTTGTTTTACAAGCATTTTTAAAAATTAATTATTTTAAATTTGTACAAATTCTACATGCTGTTGTAAAAATAGGAGCAAAAAAAAGTCACCTGGAATTTTACCAACTATGATCAATTATTGTTGTTTATTACCCATTCAAACTGCATATTTGCTTAAATGTGTTTGTGTGTGAGAGACAGACACAGTGAGAGAGAGATACAGAAAGATTGATTATACAGTTTGTTCTTGATCCTGTTTTAATTGTGAATGTCATTCAGTTATTCAGCCCTCAGTGAATAGAGGCCTACCTCATTGAGAGGACTATATTGTATGTTAAGCCAATTAAACAGTCTTCCTTTTGGAAATTTTAGTTACCAGTTTTTCTCTGTTACTAATATTGCTAAGATGGTTATGGGAATACAAAGCCATAATATAAAGAGGCAAAGGTACCAAGAGTAAATCATCACAGTACAAAGACATGAGTATTGTGATTGAAAAGGCCAGGCATGTGGATTAAAAATCCACAAGGGATTTTTTGAAGCACTATTCAACTTCATTAAATTAAAATCAATGAAATTCCAACGAAGCACAAGTTACCATTTTTCCCTTATTACCAAGGATTAAGAAATAGATACCCAATGTGTTGCCACTGCTGTGAGTGATAAGCAGTATCGTTAGTGGGACTGCAACTGGTAGTCTTTCTGAGGATGGTCTGGTTTTATTAAAATCAATTCCAAGTGTAGAAATGTTAAGATAATTTCTGCACAGATAACTGTGCAGAGTTACAAAGATGTTGTAAAAGAATGTTTGTTATAACATGAGGCATCACTGCCACAAAAGGAGGAGGGTAAATGACTCTCAAAAAGGGATTTAGTAAATGATGATGTTTTCATGCATTGGACATATTATATTGCCATTAAAATGATGATGTCAGCCTACATTTATTGACATGGAGAGAAGCTCATGATTTTTAAGTGAAATGGAGGTAAAGGAAGCTTAATTTCAATCCATTTTAATTTTTTAATTAAGTGATTTTTTATATGCAGAAAATTCTGGTGAGCTATGTCCCACATATGATAGTGATTACAATTGCATGATGTATTTATGGGTGAGCTATGTGTTCATTTTTATAGTTTTCTGTGTTTTTCTTATGATGATATATTTCTTTTGTAGTTAAGAAAATAAAAGCTGTTTCATAAAATACAAAAGGAAATACATTTCTTTTGAATCAATGATTCCATTTCTTGTACTGTATCTTAAGTAACCAAAAAGGTAGACAAAAAATTACTCTCAATAATGTTCTTTTCTCCCAGTATTCCCCAATATCATGATAATGGTGTTGGTGTCCATTGAGTTGCCCAGACCAAAAGCTAGGAGTCATCCTTGAGTCCCCTCTTTCATTGCCTCTGCGCTCTATTCGTAGGTGAAGATACCTGCCAGTGCTACTTGCAGAACATCCCAGATACGCCCACCTCTTTCCGTCTCTTATCACCACATGCCAGTGTCAGCCACCACCATCTTCATCCAGGAAGAGTGCAGCGGCCTCATTGCCTGTTCTGCAGCTGCCCTTGTTCTCTTTCTCCCCGGCCCCATTACAGTTTGTTTTTCATATAGCAACCAGAGTGATCCTTTTTAAACAAAAACCACATCATTTCATGTCCCTTCTAGCCCTCAGTGATGCTGATGAACTTCCAATATCTTCCTGTATCCTAGAAAACGCTCCACAATATAGCCTGGCCCACCTCTTTTCCTCATCTGTGACACTCTCTTCTTGTTCACTCTGCTTCAGCTATCATGGACTGCTATATGTCCTGGAAAACAGGAAGCTATTCCTGCCTAGGGCCTTTGTGTTACTGTTCTTTCTGACTGGAATCACCTTTATACCCTAATTTTTGTCTGGCCAGCGCTTGTTATTTAGATCTCATCTTTAATTTCATTTTCTCATCACCCAGTTTAAAATAGTTGCCTATTCACTCTTATTACACAGTGCTTCGTTCGTGTTTTCTTACAGTTCTCATTGCTCCTTTGTACTGCTGTTGATTTGTTACTTGGTCATTGTCTGTATCACACTGCTGGAATGAAAACCTTGAGAGTAGGCCCTTGTCTGGCTTGTGCCCTGTCATTCTCAGAGTCTTAACGTTTGCGTAGCACACAGTAGGCACTCAGTAGGTATTACTTGAGTAAGTGGATGCCATTATTTACAGCATTCTGAGGAGGCCTAGAGCAGCACTGCTTGACATCCTGTGTTTGGCGGAGCTCTTCTCTTTCATTTAATTTTAGCCCCTCTGCAGTTTTTCCCTTGGTATTTACCTGAGTGCACTGGTAGCTGCCCTGGGAGATGACGCTGAGGGACACAGGCTGTGTTCAGAAGGGCCTCATAGCCTAGCGAGCTGTGCTTTGTTAATAGATCGAGCCTGGCTCTTCCTGTTGTCCCCTAATTTCCTCAGCCCACCTATATGTAGGTTTCTTCAGACCCTTCCCACCCACATGTCTGTCATCCTGCTTCCTTCCTCCTCTTCTTTTTCCCATCCTTTTCTAAGATTTCAAGGCTTTATATTTTTTAACTATCCTTGTGCGTTTTTATGTCACTTTTTAAAATTCTGAGTTCAAGAGAGACTTATATGTTTTGTCTACTTTAG
Seq C2 exon
GATGGGAAAGCTTGTTTGGAACCATAGTTTCTAAAGAAGAAAATCAGGAAGTCATGAAAAAACTCATAATTGATGGCACATTTGACTTCAAGTTGGAGAAGACCTACATAAATGAAGATAAGTTAGAGAAGCAACAAGGCAAAAAGAACAGACTTTTCAGTAAAGTGTTAGTTACCATCAAAAAAGTCTACATGAAGGAGAGGAGCTTTAAAGGTGTTGAATTTGGGAAAAATCTTGGTCTAAAATCATCGCTTATTAGAAAACCGAGAATAGTTTCCAGAGGAAGGAGACCCCGTTCACAGCAGTATTCAGTTCTCTTTAAACAACTGGGGGTCAACACAGTGCGTAAATGTTATAAATGTAATATCTGTGGGAAAATCTTCCTCCACAGTTCCTCCCTGAGTAAACACCAGAGAATCCACACTGGAGAGAAGCTCTATAAATGTAAGGAATGTAGGAAAGCCTTCAGCCAAAGCTCATCCCTAACTCAGCACTTGAGGGTTCATACAGGAGAGAAACCTTATATATGTAGTGAATGTGGAAAAGCCTTCAGTTTCACCACATCTCTTATTGGACACCAGAGAATGCATACTGGAGAGAGACCTTATAAATGCAAGGAATGTGGAAAAACATTTAAAGGTAGTTCATCTCTTAATAATCACCAGCGAATTCACACAGGAGAGAAGCCCTATAAGTGTAATGAATGTGGGAGGGCCTTCAGTCAGTGCTCATCTCTCATTCAGCACCACAGAATTCATACTGGGGAGAAACCGTATGAATGTACTCAGTGTGGGAAAGCCTTCACTTCAATATCGCGGCTAAGTAGGCACCATCGAATTCATACTGGAGAGAAACCCTTTCATTGTAACGAGTGTGGAAAAGTATTCAGCTATCACTCAGCCCTTATCATACATCAGAGAATTCACACTGGTGAGAAACCATATGCATGCAAAGAATGTGGGAAAGCCTTCAGCCAAAGCTCAGCTCTCATACAACATCAAAGAATTCACACTGGAGAAAAACCCTACAAATGTAATGAATGTGGGAAAGCCTTCTCTTGGATTTCACGGCTTAATATACATCACAGAATTCACACTGGAGAGAAACCATATAATTGTAAGGAATGTGGAAAAGCCTTCAGTTCCCACTCAGGCGTTAATACTCATCGAAAAATTCATACTGGAGAAAAACCTTATAAATGTAATGACTGTGAGAAAGCCTTCAACCAAAGCTCAGCTCTAATTCAGCACCAGAGAATTCATACTGGAGAGAAACCATATAATTGTAAAGTGTGTGGGAAAGCCTTCAGACAGAGTTCATCCCTTATGACACACATGAGAATTCATACAGGGGAAAAACCTTATAAATGTAAAGAATGTGGGAAGGCTTTTAGTCAGAGCTCATCTCTTACTAATCATCAAAGGACTCATAATTGAGAAAAACTGTATAAATGCATGTAGGAACTGAAGTTATATTCCATACTGAGTATCAAAAAATTCATTGTGGGGAGAAAGTGATGAAGAGTAGTTAATCATAGGTAAAACTTCAGCATTAGACCTCATCACACATCAGAGACTTCATGATGCAGGGTAACCTTGGGAATGCTAGAAAAGCTTCTATAAAATGTTTATTCATATGTTCTTAAGTTATTACCATGAAATGGAGAATTTTTAAGATTGCAGGGTTAGTATTTGATTGTCTAGTGATGTACGATAACAGCCACCAGCTTTCCTGAGCATCACTGGGAAGCCTGCTGTTTATGTACAAGTACAGCCATAAAATCCAGACACAGATAAATCTAGGAATCTATTTTTTGAAACTATTATGCAAGCCAGTGGTACTAGAAAGAATGTTTTAGAAAAGAAATATGTACAGGTGACCCATAGCTACCTCACTGTCACTAAAATGTTTTTTAATAATCTTAAAGCAGATTCTGCACTTCATGGTAAAGACTTTGAATTGTTTCTCTGCTTTCTAAGCCATTCACCTGAGAAGAAAATCACTCCATAAACTATGCAGACGTACTGTCTTTGCGTTTTCTTCCTGACTACTTGTTCCAAACTCTGAGTCAGATCTAAAGTCACTTTAAGTCACAGAACGCATGGTATTTCACTTGTTTTTCTCATTAAAAGTGATTACCTTTGCTGTATTAAATTGATAAGTAAAGGTCATTCAGACAACCACTGCTTTTGCAATTTACTGAAAAATGTTATAAATTATCTCAGAATGTAGCCAATAGCAAGCACAGCTCAGCTCCCAGGGTCTGCCTGCTTCTGTGAGCTTTCTGGTTACCAGCCACCAGAAGGCCCAGGAACAATGTAGAACTCAGGTCATCATCCTTGGAGGTAAAATGAACCAGATGATTTTCACCCTTACTTCCACTTTTTCGCCTTCATCAGACAAGGTTCACTTTCTCCCCACACTCTAAAGGTCACTGGGCAAATATTTAGGCTCTGAGTTCAGATACTCTTTCTTCCAGCAAATGGACTTACACTCTTCAACAAGTGATTTAGCTCATTTCAGCATTTCTAAAATGTGAATCATAAGATTAGCAAGCTAAAAACAGTTATCTCACAAGTCAAAATTGTTGGGCTTTACAGAGGCTAACATCTAGTTTAGCCAAGTTTATCAGGAGGGGGCAAGCACTTAAGGGCTGAAACGACCCATTTCATAAAGTGCTAAGTTTTTCTGCCAAGGAACTTTAAAAAATAGAAAACTGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCAAGACGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCACGTCTCCACTAAAAATACAAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234284:ENST00000444149:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains