RnoINT0168731 @ rn6
Intron Retention
Gene
ENSRNOG00000030517 | Zfp879
Description
zinc finger protein 879 [Source:RGD Symbol;Acc:1563273]
Coordinates
chr10:36326633-36332826:-
Coord C1 exon
chr10:36332734-36332826
Coord A exon
chr10:36328516-36332733
Coord C2 exon
chr10:36326633-36328515
Length
4218 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
TGACATTTTGTTTAATTTAGGGT
3' ss Score
9.7
Exon sequences
Seq C1 exon
GGATTCTGTCTCCCAAGCCAAAGGTCATCTCTCAGTTAGAGCAAGCAGATTTCCAGATGGTGGAAAGTGGAATGTTTCAAGGTGTATACCTCG
Seq A exon
GTAAGTGGCAGAGGGAGTGGACTTGAACCTGGCAGTTCCTACCTGCCTGGGCACACTAAGGGGATTAAGTTCAGAGGACACCTGCTAGGAACCTCCTTTGATGCGCCTGGGGGTTGCTGGCAAGGATGTATGTCCTTTTTGTTTCTGATCACCTGGTGCATCGGGTTCAGCGGGAGAGGTGAATTGTCCAAGCACGGTTGTACTTTGTCAAATGCCTCTTGTCATCTGAAGTCACGTGCTGCCACGGGACACGTGTTAAATGTTTATCAATCTTGCTCCATCTACTGTCCCTTCACATTTCCTGAACTGATAACTCTTTCCCTTCAGTGGTTTGCGTGTAGCTTTCATGACCCCTGTTCCAGCTTCCCCGTAAACACATTACTAATAACCTCAGACTACCCCAAAAGTGTCGGTGTCGCACTAAGGAAAACAAATCACAGGACTTCCTCTTGTGGTTGTTCGTTACCAAGAACAGGCCCAGCTTGAGTTCTTTACTTCTTTCTCCCCGTGCCTTCCACCTCTCCCATCTGCAGCTTGTCTGTTGCGTGAATCTAAATCTGTGCCTGCCTGAATGCTCTCTTAGGAGTTTGTCTGCCACTGTGCCTGTGTGTGTCCCTAGCGAGGGCTCTGAAGCCGTAATTGGTTAATCTGCTGTAATCTCCCCGGCAGTGGGTGTGCACACTCCTTGCTCCCCGCCTAAATGTTTTGGATCCAAGGATGAAAGACCACACACACACACACACACACACACACACACACACACACACACACACAGAGCCTTCTATTTTAATATGTCTTGAACAGCCCAATGGCTGGGCACTTTCAAACCTCCCTGTGGCTAATGCACTCTCCTCCTGAATTGTTACTTACTAAAACCTATTTTCTATCCTGGCCATCACAGACTCAGGCCTGTAGCCCTCGTGGGCCATGACCCCCAACTCTTTCATTTTGGAAGTGTCTCTGTCTCTCTCTCTCCTACACTTGTTAGGCTGGGGCCTTCTCCCTGGCCGTTTCCTTCCTCCTGGATTTCCTTGCCCCCAGAACCTCAAAGTCTCACCTGTCACCCTGCCCAGCCATTGCCACCTGCAACTTTATTTACAAATTAGAACCAGCTAGGGGGCAGGGACATCTCGCTTGTAGTCATCCAAATTCCCATGCAAATTGGGAACCCAACTAACATAATATAGACAGTAAACTAAATCTACAACAAGGCTTTAGCTCTGTATTTATTTAACATCACAGAGATATGGGAAAAGAATGAGGGATATTTTACAGAAATCTTTAACAGAGTTTTACAAGGGATAAAGTTTTGCTAACTGCAACTGACCCAGATAACAGATCAAAGCGATCATGTGATATCTGAATGCTGCTTTCGACTCTATGTCAGTATGTCAGGTATTTATATTATAAGGTTGTTCTTCAACCTATTTTTTCCTTTCTACAAGTGACTACCATATCATGCATTGTTCTCTGGGTCAGGGGCATGGAATTATACATTAGCTTAGGTTTTTAAAGTTGGTTGCATGGAAAAAAATCCACGGCAAGTAAGGACAATTGTCACATTGTTCTTGCAAAGGCAGGTTAAACAGACAGGCTGAGCACGTAAGTAGGGTAGCATTCCTAATTCTGAAGTGATCTCCAGGTGTATTAATGACCTCTGGCTATGAGGTCCAGCAGAAGTTCCAGTCTTTTCGAATGTAAGAGGTTTTCATTACATATGTGTTACCATACCTTGGGCTTTTGCCTATTTTGTCTATAACTCAATATCCATTGTTAAGGAAAATCAACAAAAGTAAATGTATGTATACATACATACATACAGAATATGTATAGAGTTTAAGCAGGTTTGCAGATACTCATTAGGCCCTTCTTGACTGTGACATTCACAAGCCACATAGAGCAGATACATGATTTCTGGTCTGTACAGTGGAGTTTGTTAGACTCTGGTTGCTGTACCAGAAGTGCTCACTTTGGATTTTGTCTTTGTTTCTGGTACCAGACGATAATTCTCTTGGGCTCAGTTACTTACCTAGAATTCACTTTGTGCTGGCAGTAGCTGGGCATTCTGAGTCAATTTTGTCTTGGGTTGCCATTTATGAGCTGTCTTTAGATTTTCCTTTTTTTTAAATGAGGATATTTTCTACCAATAACCTTTTTCAGAGTCTCTGTGTACAGCATATGTCTATGTCTAAGCCCTTCCTCCTCTCCTTTAGACATAGGCTTTACAGTAGAATTCTGACATTAGATTTCTTTTCCCCTATCAATAGCATCCACACTTGGCTCCACTCTGTGAACACCGAGTGTTGATAACTGTTTATCTGTCTGATTCTGATTGTCTTTTTTTTCTATATCAGTAACTTCTTTTATAATCAAGAGAATGGAAGCTCTTTTATAAAATGTATTCATTTCTTTTGAATCAGTGATTTAATTTCTTATAGTCTATCCTTACTACCCTGTCTGTCATTTAGACTTTATCTTTTTTTACATTAGTTATTTATTTTGTGCAGGAGGGTAGTTGGGGGATGAGTCAGAGCATGAGTGTGGAGCTGAGGGCAGCTTTCAGAACCCAGTGCTTCCTCTACCACTTCAGTCTAAGTTTGAACTAAGTTGTTGCTGGCAGCGTGATCCCCGTCCAGCCATCTTGGGCCCTAGATTTATCTTCAACTTCGTCTTATTACTACTCAGCTTAAATATCAGTATAGCAGCCTCCACTACCCATTGCTTTGGTTTTGTTCGTTCTTATATATTTTTCATAAGGCCATAGTTACCTCTTTGGCGGTCTGGCTACTTGGCTGTTGAATGGAAAGTTTGCTCTTCCCTGGCTATCTTCCCTGTAATTCCCAGAGCACCGGCCTCTGCACGGTCTATTGAGGGAAGGCGCCTTACAGCGTCAGCACTCTGACAACAGCCAGCATGGCACTGTCGAGACTGATACTGTTTCAAAGAGTTCTTGGAGCATGGGCTCCTCCTTCCCCCTCTCCTCCTCTTCTTCCTCTTCCTCCCTGCAGTTTTCTTTTGGGATTTACCTGAGTATACTGACCCCTGACTTGGGTGCTGAAACTGAATAGTAACATAAGCTGTGCTCAGAAATACATGACAATCCAGGCTTTGTTGCTAAGTCAAGACTGGCACCCCTTCTTACTGTTAGAGCTGCCATCTGATGTCCTCAGCCCATCTTCACCATCTTCACACACACACACACACACACACACACACACACACACAGACAGACACTCAGGCACTCACAGACACACACACATACACACACACTCAGGCACACAGACATGCAGGGATACACAGACACACACAGATACACACACACAGAGACACACAGAGGCAGGCACACACACACAGACACTCAGGTACTCACAGACACACAGACAGACAGACAGACAGACACACACACACTCAGGTACTCACAGACACACAGACACAGACACTCAGGCACACAGACATGAAGGCGCACGCACACACACACACACACATACACACACACACAGACACTCAAGCACACATAGACGTGCAGGCATACACAGACACAAACACACACACACAGAGGCAGGCACACACACACACACAGACACTCAGGCACTCACAGACACACACACAGACACACACACACACTCAGGCACACAGACATGCAAGCATACACAGACACACACACAGATACACAGAGGCAGGCAGGCAGGCACACACACACACACACACACACAGACACACACAGACACACAGACGAGGCAGGCAGGCAGGCACACACACACACACACACACACACAAACACACAGACACACAGAGGCAGGCAGGCAGGCACACACACACACACATACACGACACACAGAGGCAGGCAGGCAGGCACACACACACACACACACAAACACACAGACACACAGAGGCAGGCAGGCACACACACACAGTCACACACACACACAGACACTCAGGCACACAGACATGCAGGTGCGCGCACACGCGCACACACACACACACACACAGACACACACACACACACACACACACACACACTTCTTCAGACCTTCCAGGCGTGTCTACCCTCCTCTATTTCCTTTCCTTTGTCCTTGTCCTAACCTTTGCTAAGATTTTGAGTTTGGATTTGTTAGCTGTGTCACGTGGTTTTGAGTTTGGCTTTTCGGTGTCATGTATTTTTTGCGTCATTTTCCTTTATTCTCTGTGCAAGAGTTGCTGACATTTTGTTTAATTTAG
Seq C2 exon
GGTGGAAGAGCTTGTTTGAACCCAGGGTTTCCAAAAAGGAAAATAAGGAAGTCTTGAAACACCAGAGAGTTGATGATCTTTTCGGCTTCTTATTGGGAAAACCGTGTGTAAATGAGGAACAGTTGGAGGAGCAACCAGGCTACAGGAAAAACCTCTTCAGTGAAATGCTGCTTTTTCTTAGAAGAGACTGTACACACGAGAGGGGCTTTCCAGGGATCGAACTTGTGAGAAATCCTAGGAAAACCAGAGTTGTCTCCGAGGGAAGAAAGCCCCGCTCCCCGCAGTACTCAATTCTATTCAGACAACTGGGGTTCAACGCAGTGCACAAGCTTTATAAGTGTAACATCTGTGGGAAGGGCTTTCTCCACAGTTCTTCCCTGAGCAAACATCAGAGGATTCACACTGGAGAGAAGCTCTACCAATGTAAGGAATGTCGGAAGGCCTTCAGCCAAAGCTCGTCCCTGACACAGCACCTGAGAGTCCATACTGGAGAAAAGCCGTACGTCTGTAGTGAATGTGGGAAGGCCTTCAGCTTCACCACCTCTCTCATTGGGCATCAGAGGATGCACACTGGAGAGAGACCCTATCGATGTAAGGAATGCGGCAAAACCTTCAAAGGCAGCTCGTCCCTTAACAATCACCAGCGGATCCACACTGGAGAGAAGCCTTATACGTGTAGCGTGTGTGGGAGAGCCTTTAGCCAGTGCTCGTCTCTTATTCAGCATCAGAGGATTCACACTGGGGAGAAACCGTATGAATGCAGCCAGTGTGGGAAAGCCTTTACGTCCATATCACGGCTGAGCAGACACCACCGCATCCATACCGGAGAGAAGCCCTTTCACTGTAATGTGTGCGGCAAAGTGTTCAGTTACCACTCGGCCTTGATCATTCATCAGAGGATTCACACTGGAGAGAAACCGTATGCATGCAAGGAGTGTGGGAAAGCCTTCAGCCAGAGCTCAGCACTTATCCAGCATCAAAGAATCCACACGGGAGAAAAGCCGTACAAGTGTGACGAGTGTGGGAAGGCCTTTTCCTGGATCTCGAGGCTTAACATCCACCACAGAATCCACACGGGAGAGAAACCTTACCACTGTAAAGAATGCGGGAAAGCTTTTAGTTCCCACTCTGCAGTCAATACTCACAGAAAAATCCACACTGGCGAGAAGCCTTATAAATGCAGTGACTGTGAAAAAGCCTTCAACCAAAGCTCAGCCCTCATCCAGCATCAGAGAATTCACACCGGAGAGAAACCATTCAACTGTAAAGTCTGTGGGAAAGCCTTCAGACAGAGTTCGTCGCTTATGACACATACGAGGATTCATACAGGAGAAAAACCTTATAAATGCAAAACATGCGGGAAAGCGTTCAGTCAAAGCTCATCTCTTGCCAACCACCAGAAGACACATAATTGAGGACAACCGTATAAGTAAAATGCATGCGGTAAATCTGCCTTGAGACATTCATTGCATACTGACTGTGACAGAATTCATCCAGAGAGTGATGAGTGGTAGTTAGTCGAGGGTGAGCATGAGGGTAGATTTCAGCAAACCTCTGGCATTCGTGATGCAGAATAAACTTGTGTTTGGAAAAGTTACATAGAATGTTTTCCACATGTTCTGAAGTTTTACTGATGACGGAGTTGACACTAAGATTGAAGGATTAATATTTTCTTTCTAGTGATGATGCAGAATTCATAGCCACCAACCTTTTAAAGCATCACTGGGACCTACTGATTTAGGCGAAAGTGCATACGTCAGACCAGTCTAGGATCTGTGCTGAACAATGCCTTTGAGTGTGAATGCAAAATAGCTGAATTGGAAAAAATGAGGAAAAAATATCTAGCTGCCCATGGTCACTAAAGTTTGCTTTTCAATACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030517:ENSRNOT00000030035:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF127602=Zn_Tnp_IS1595=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]