RnoEX0101750 @ rn6
Exon Skipping
Gene
ENSRNOG00000030517 | Zfp879
Description
zinc finger protein 879 [Source:RGD Symbol;Acc:1563273]
Coordinates
chr10:36326633-36333342:-
Coord C1 exon
chr10:36333216-36333342
Coord A exon
chr10:36332734-36332826
Coord C2 exon
chr10:36326633-36328515
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTTGTTCATGAACAGGGA
3' ss Score
8.46
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GAGCCATTGACGTTCAGGGACGTCGCCGTGTCCTTCAGCCAGGATGAGTGGCTGCACCTAGACCCTGCTCAGAGAACTCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq A exon
GGATTCTGTCTCCCAAGCCAAAGGTCATCTCTCAGTTAGAGCAAGCAGATTTCCAGATGGTGGAAAGTGGAATGTTTCAAGGTGTATACCTCG
Seq C2 exon
GGTGGAAGAGCTTGTTTGAACCCAGGGTTTCCAAAAAGGAAAATAAGGAAGTCTTGAAACACCAGAGAGTTGATGATCTTTTCGGCTTCTTATTGGGAAAACCGTGTGTAAATGAGGAACAGTTGGAGGAGCAACCAGGCTACAGGAAAAACCTCTTCAGTGAAATGCTGCTTTTTCTTAGAAGAGACTGTACACACGAGAGGGGCTTTCCAGGGATCGAACTTGTGAGAAATCCTAGGAAAACCAGAGTTGTCTCCGAGGGAAGAAAGCCCCGCTCCCCGCAGTACTCAATTCTATTCAGACAACTGGGGTTCAACGCAGTGCACAAGCTTTATAAGTGTAACATCTGTGGGAAGGGCTTTCTCCACAGTTCTTCCCTGAGCAAACATCAGAGGATTCACACTGGAGAGAAGCTCTACCAATGTAAGGAATGTCGGAAGGCCTTCAGCCAAAGCTCGTCCCTGACACAGCACCTGAGAGTCCATACTGGAGAAAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030517-'3-4,'3-3,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF127602=Zn_Tnp_IS1595=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGGTGATGCTGGAGAAC
R:
TGCTCCTCCAACTGTTCCTCA
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]