BtaEX0041580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038541 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr7:2240496-2255731:-
Coord C1 exon
chr7:2255661-2255731
Coord A exon
chr7:2252176-2252271
Coord C2 exon
chr7:2240496-2243077
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTGCTCATGAACAGGGA
3' ss Score
7.72
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGCCCTCTCTAAAAGGAGCAGCAGGACGGAGGGAGAAATGGCCACAAGGTTGCTGCCAGCCCAGGCTCTG
Seq A exon
GGATTCTGTTTTCCAAACCAAAAGTTATCCTCCGGTTAGAACAAGGGGAAGACCCCTGGATGGTGGAAAATGGAGTTTCTCAAAGCACATATCTAG
Seq C2 exon
GATGGGAGAGCTTGTTTGAAACCAGAATTTCTGAAGAAGAAAATCAGGAAGTAATGAATCAACTCTTAGGTGATGGTCCTTTTGACTTTAGGTTGGGAAAATCTACATAAACGAGGAAACCCTAGAGAATCAACAAAGCAAAGAAAACAGAGCTTTGAGGGAAGTCTTAGTTACCATCAAGAAAACATGCATGAAGGACAAGAGCTTTATAGGTATTGACCTTGGGAAAAATCTTGATCTGAAATTATCACTTATTAGAAAACCCAGAATCATTTCCAGAGGAAGGAAACCTTGTTCACAGCAGTATTCAATTCTATTTAAACAGCTGGGAATCAGCACAGTGCGTAAGTGTTACAAGTGTAATATCTGCGGGAAAATCTTCCTCCACAGTTCTTCCCTGAGTAAACATCAGAGAATCCATACTGGAGAGAAACTCTATAAATGTAAGGAATGTAGGAAAGCTTTTAGCCAAAGCTCGTCTCTAACTCAGCACCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038541_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGAAATGGCCACAAGG
R:
TGATTCTCTAGGGTTTCCTCGT
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development