BtaEX0041579 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038541 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr7:2240496-2255731:-
Coord C1 exon
chr7:2255661-2255731
Coord A exon
chr7:2252714-2252840
Coord C2 exon
chr7:2240496-2243077
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAATGGGTTTCTGTTACAGGTG
3' ss Score
8.24
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGCCCTCTCTAAAAGGAGCAGCAGGACGGAGGGAGAAATGGCCACAAGGTTGCTGCCAGCCCAGGCTCTG
Seq A exon
GTGTCTGTGACATTCAGGGATGTGGCTGTGTTCTTCAGCCGGGACGAGTGGCTGTGCCTAGACTCTGCGCAGAGAACCTTGTACCAGGAGGTGATGCTGGAGAACTACAGCACCCTGTTCTCTCTGG
Seq C2 exon
GATGGGAGAGCTTGTTTGAAACCAGAATTTCTGAAGAAGAAAATCAGGAAGTAATGAATCAACTCTTAGGTGATGGTCCTTTTGACTTTAGGTTGGGAAAATCTACATAAACGAGGAAACCCTAGAGAATCAACAAAGCAAAGAAAACAGAGCTTTGAGGGAAGTCTTAGTTACCATCAAGAAAACATGCATGAAGGACAAGAGCTTTATAGGTATTGACCTTGGGAAAAATCTTGATCTGAAATTATCACTTATTAGAAAACCCAGAATCATTTCCAGAGGAAGGAAACCTTGTTCACAGCAGTATTCAATTCTATTTAAACAGCTGGGAATCAGCACAGTGCGTAAGTGTTACAAGTGTAATATCTGCGGGAAAATCTTCCTCCACAGTTCTTCCCTGAGTAAACATCAGAGAATCCATACTGGAGAGAAACTCTATAAATGTAAGGAATGTAGGAAAGCTTTTAGCCAAAGCTCGTCTCTAACTCAGCACCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038541_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGAAATGGCCACAAGG
R:
AGCTCTTGTCCTTCATGCATGT
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development