MmuEX0053684 @ mm9
Exon Skipping
Gene
ENSMUSG00000044296 | Zfp879
Description
zinc figer protein 879 [Source:MGI Symbol;Acc:MGI:3053099]
Coordinates
chr11:50651412-50654094:-
Coord C1 exon
chr11:50654028-50654094
Coord A exon
chr11:50651912-50652038
Coord C2 exon
chr11:50651412-50651507
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAATGGGTTTGCTGTTCCAGGAG
3' ss Score
6.52
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
AGGGTCTTCTCAGGAGGAGCTACAGAGGGAGAAAATGACCACGAGGTTGCTGCCAGCCCAGGTTCAG
Seq A exon
GAGCCTGTGACGTTCAGGGATGTGGCCGTGTCCTTCAGCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAACCTTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCGCTGG
Seq C2 exon
GGATCCTGTTTTCCAAGCCAAAGGTCATCGCTCAGTTAGAACAAGCAGAAGACTTCCCGATGGTGGAAAGTGGGATGTTTCAAGGTGTGTACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044296_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTCTTCTCAGGAGGAGCT
R:
ACACACCTTGAAACATCCCACT
Band lengths:
157-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: