HsaEX6101528 @ hg38
Exon Skipping
Gene
ENSG00000234284 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr5:179024970-179028127:+
Coord C1 exon
chr5:179024970-179025037
Coord A exon
chr5:179027473-179027599
Coord C2 exon
chr5:179028032-179028127
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTGGGTTTGCCATTCCAGGAG
3' ss Score
4.91
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGCCTTCTCCAAGAGAGGCAGCAGGGAGGGAGAAATGGCAAGGAGGTTGCTGCCAGCCCATGTACAG
Seq A exon
GAGTCCGTGACGTTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGAGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCATCCTGGTCTCACTGG
Seq C2 exon
GGATTCTCTTTTCCAAGCCAAAGGTCATCTCCCAGTTAGAGCAAGGAGAAGACCCCTGGATGGTGGAGAGTGGAGTTCCCCAAGGCGCACATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234284-'5-4,'5-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCTCCAAGAGAGGCAG
R:
GAGATGTGCGCCTTGGGGAA
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains