RnoEX6047130 @ rn6
Exon Skipping
Gene
ENSRNOG00000030517 | Zfp879
Description
zinc finger protein 879 [Source:RGD Symbol;Acc:1563273]
Coordinates
chr10:36332734-36335699:-
Coord C1 exon
chr10:36335633-36335699
Coord A exon
chr10:36333216-36333342
Coord C2 exon
chr10:36332734-36332826
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAATGGGTTTGCTATTCCAGGAG
3' ss Score
5.27
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGTCTTCTCAGGAGGAGCTACAGAGGGAGAAACATGACCAAGAGGTTGCTGCCAGCCCAGCTTTGG
Seq A exon
GAGCCATTGACGTTCAGGGACGTCGCCGTGTCCTTCAGCCAGGATGAGTGGCTGCACCTAGACCCTGCTCAGAGAACTCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq C2 exon
GGATTCTGTCTCCCAAGCCAAAGGTCATCTCTCAGTTAGAGCAAGCAGATTTCCAGATGGTGGAAAGTGGAATGTTTCAAGGTGTATACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030517-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCTCAGGAGGAGCTACA
R:
GGTATACACCTTGAAACATTCCACT
Band lengths:
156-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]