HsaEX6101528 @ hg19
Exon Skipping
Gene
ENSG00000234284 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:37273]
Coordinates
chr5:178451971-178455128:+
Coord C1 exon
chr5:178451971-178452038
Coord A exon
chr5:178454474-178454600
Coord C2 exon
chr5:178455033-178455128
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTGGGTTTGCCATTCCAGGAG
3' ss Score
4.91
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGCCTTCTCCAAGAGAGGCAGCAGGGAGGGAGAAATGGCAAGGAGGTTGCTGCCAGCCCATGTACAG
Seq A exon
GAGTCCGTGACGTTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGAGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCATCCTGGTCTCACTGG
Seq C2 exon
GGATTCTCTTTTCCAAGCCAAAGGTCATCTCCCAGTTAGAGCAAGGAGAAGACCCCTGGATGGTGGAGAGTGGAGTTCCCCAAGGCGCACATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234284-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.192
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCTCCAAGAGAGGCAG
R:
GAGATGTGCGCCTTGGGGAA
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)