RnoINT0168730 @ rn6
Intron Retention
Gene
ENSRNOG00000030517 | Zfp879
Description
zinc finger protein 879 [Source:RGD Symbol;Acc:1563273]
Coordinates
chr10:36332734-36333342:-
Coord C1 exon
chr10:36333216-36333342
Coord A exon
chr10:36332827-36333215
Coord C2 exon
chr10:36332734-36332826
Length
389 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTCTTCTTGTTCATGAACAGGGA
3' ss Score
8.46
Exon sequences
Seq C1 exon
GAGCCATTGACGTTCAGGGACGTCGCCGTGTCCTTCAGCCAGGATGAGTGGCTGCACCTAGACCCTGCTCAGAGAACTCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq A exon
GTAAGGAGCTTCCTGGGGGCTGACGGAGGCACGAGATCCCTACCCACCACCTGGGAGGGCATGTGCAGGGTTTGGCTAGGTTGAGCTGGGCTCAATCATGGCTGCTCTTCCCCTTGGCTATTCTCCGAAGTCTGAACACAGCTGAATTGGCAAAGGGTACCTTCTCTGTGTTTTTCTGTTGCTATGGGTTCCCTAAGATATCGCACCAACAGGAACACCGAGCCAGATCCCTGACTGATCCTCAGGCTTCTGGACACCCTCTAGGAGCCCGGTTTTAGGCTGCTTTCTAAACAGTTTCTCCTCCTGTGCATGGTATCCCTACCTCAGGGTCGACTTGGGCTGGATCTCTGTGCCAGTATGGCCACTCATGTCTTCTTGTTCATGAACAG
Seq C2 exon
GGATTCTGTCTCCCAAGCCAAAGGTCATCTCTCAGTTAGAGCAAGCAGATTTCCAGATGGTGGAAAGTGGAATGTTTCAAGGTGTATACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030517:ENSRNOT00000030035:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGACGTTCAGGGACGTC
R:
GGTATACACCTTGAAACATTCCACT
Band lengths:
214-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]