HsaINT0188578 @ hg38
Intron Retention
Gene
ENSG00000234284 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr5:179027473-179028127:+
Coord C1 exon
chr5:179027473-179027599
Coord A exon
chr5:179027600-179028031
Coord C2 exon
chr5:179028032-179028127
Length
432 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCTTTCTTGTTCATGAACAGGGA
3' ss Score
8.81
Exon sequences
Seq C1 exon
GAGTCCGTGACGTTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGAGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCATCCTGGTCTCACTGG
Seq A exon
GTAAGGAACTTTCCTCCTGATGCAGAATCTGCCAGGAGAGCACCTTAGCACCCTCAGGGGGCACATTTGGAGGGCTTGGCCAGGTCGGCTCACAGGTGGGCTCCAAGAGTGGCCATTGCCATTCCCCTTGGTTGTATGGAGAGACCTTGGCTTAGTAGAGTTGATGAAGGGGTCTTTTCTCTGCTTTTCCTGTCTTCTGCCCACTGAGCTCTGTTCCCTGAGCCCCACAGGGTGTTCCTGCTGAGAGGAGTGCACAACCAGAGCCCTGACTTTCTTCCTGGGACCATCTCCTGGTTGTCCTCTAGGAGCCCAGTTTGAAGCCTCTCAGAACAAACCTCCTCCTTCCCTGTACTGCCCCTCTGCCCTGGGCACTCTGGGGCTGGACCCGCCTGCTACGATGGCCGCTCACGTTTCTTTCTTGTTCATGAACAG
Seq C2 exon
GGATTCTCTTTTCCAAGCCAAAGGTCATCTCCCAGTTAGAGCAAGGAGAAGACCCCTGGATGGTGGAGAGTGGAGTTCCCCAAGGCGCACATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234284:ENST00000444149:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.144
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCGTGACGTTCAGG
R:
GAGATGTGCGCCTTGGGGAA
Band lengths:
222-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains