MmuINT0180028 @ mm9
Intron Retention
Gene
ENSMUSG00000044296 | Zfp879
Description
zinc figer protein 879 [Source:MGI Symbol;Acc:MGI:3053099]
Coordinates
chr11:50651412-50652038:-
Coord C1 exon
chr11:50651912-50652038
Coord A exon
chr11:50651508-50651911
Coord C2 exon
chr11:50651412-50651507
Length
404 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTCTTCTTGTTCACGAACAGGGA
3' ss Score
7.76
Exon sequences
Seq C1 exon
GAGCCTGTGACGTTCAGGGATGTGGCCGTGTCCTTCAGCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAACCTTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCGCTGG
Seq A exon
GTAAGGGGCTTGGTGGGTAAGGGGTTAAGACTGCCGTGGAAGCACGTGACCCCTACCCACCACCTGGGAGGACACGGACAGCGTTTGGCTAGGTTGGGCCTGTGGATGGGTTCAGTCATGGCTGCTCTTTCCCAAGGCTATTCTGAGAAGTCTGAGTTGACAAAGGGTTCCTTCTCTTGTGTTTTTCCTGTTGCTATGGGTCCCCTGAGATCTCCCAGCAAGAGGAGCCCCGAGGCAGAGCCCTGACTCAGATCCTGAGACTTCTGGCCATCCTCTCGGAGCCCAGTTTTAGGCTGCTTTCTAAACAAAGTTTCTCCTCCTGTACATGGTACCCTGCCTCAGGGTCTACCTGGGCTGGATCTCCGTGCCAGTATGGCCACTCATGTCTTCTTGTTCACGAACAG
Seq C2 exon
GGATCCTGTTTTCCAAGCCAAAGGTCATCGCTCAGTTAGAACAAGCAGAAGACTTCCCGATGGTGGAAAGTGGGATGTTTCAAGGTGTGTACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044296-Zfp879:NM_173387:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGACGTTCAGGGATGTG
R:
ACACACCTTGAAACATCCCACT
Band lengths:
214-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: