BtaINT0166176 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038541 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:HGNC:37273]
Coordinates
chr7:2252176-2252840:-
Coord C1 exon
chr7:2252714-2252840
Coord A exon
chr7:2252272-2252713
Coord C2 exon
chr7:2252176-2252271
Length
442 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCTTTCTTGCTCATGAACAGGGA
3' ss Score
7.72
Exon sequences
Seq C1 exon
GTGTCTGTGACATTCAGGGATGTGGCTGTGTTCTTCAGCCGGGACGAGTGGCTGTGCCTAGACTCTGCGCAGAGAACCTTGTACCAGGAGGTGATGCTGGAGAACTACAGCACCCTGTTCTCTCTGG
Seq A exon
GTAAGGACATTTCCTTGTGATGTAGAATCTGCTGGGGGAGCACCTTGGTGCCCTCTCCGAGGAGGGCATGGCCAGACTCAGCCCACAGGTAGACTCAGAAAGCAGCGGTTGCTGTTGCCCTCAGCTGCAGGGACAAGTCTCAGCTTGGCACAGTTGGTGATGGGCATCCTCTCTGTACTCTTCCTGTCTTCTGCCCCCTGGACTCTGTCCCTCTGCGTCTTACAGGAGGTTCCAGCTTAGAGGAATGTACAACCAGAGCCCTGACTTTCTTCCTGAGACCACTTCCTGGCCCTCCTCTGGGAGCCTGGTTTTAAGCCCTTCTCAGAACAAATCTATTTACTCTCAACTGTCCTTTGCCCCAGACTCTGGGGCTGGATCTGAGTGAGTCACTGGCCACTCATGTCTGCACCATGGATTCATTCTCTTTCTTGCTCATGAACAG
Seq C2 exon
GGATTCTGTTTTCCAAACCAAAAGTTATCCTCCGGTTAGAACAAGGGGAAGACCCCTGGATGGTGGAAAATGGAGTTTCTCAAAGCACATATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038541:ENSBTAT00000005584:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGTGACATTCAGGGATGT
R:
TAGATATGTGCTTTGAGAAACTCCA
Band lengths:
222-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]