HsaINT0188578 @ hg19
Intron Retention
Gene
ENSG00000234284 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:37273]
Coordinates
chr5:178454474-178455128:+
Coord C1 exon
chr5:178454474-178454600
Coord A exon
chr5:178454601-178455032
Coord C2 exon
chr5:178455033-178455128
Length
432 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCTTTCTTGTTCATGAACAGGGA
3' ss Score
8.81
Exon sequences
Seq C1 exon
GAGTCCGTGACGTTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGAGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCATCCTGGTCTCACTGG
Seq A exon
GTAAGGAACTTTCCTCCTGATGCAGAATCTGCCAGGAGAGCACCTTAGCACCCTCAGGGGGCACATTTGGAGGGCTTGGCCAGGTCGGCTCACAGGTGGGCTCCAAGAGTGGCCATTGCCATTCCCCTTGGTTGTATGGAGAGACCTTGGCTTAGTAGAGTTGATGAAGGGGTCTTTTCTCTGCTTTTCCTGTCTTCTGCCCACTGAGCTCTGTTCCCTGAGCCCCACAGGGTGTTCCTGCTGAGAGGAGTGCACAACCAGAGCCCTGACTTTCTTCCTGGGACCATCTCCTGGTTGTCCTCTAGGAGCCCAGTTTGAAGCCTCTCAGAACAAACCTCCTCCTTCCCTGTACTGCCCCTCTGCCCTGGGCACTCTGGGGCTGGACCCGCCTGCTACGATGGCCGCTCACGTTTCTTTCTTGTTCATGAACAG
Seq C2 exon
GGATTCTCTTTTCCAAGCCAAAGGTCATCTCCCAGTTAGAGCAAGGAGAAGACCCCTGGATGGTGGAGAGTGGAGTTCCCCAAGGCGCACATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234284-ZNF879:NM_001136116:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCGTGACGTTCAGG
R:
GAGATGTGCGCCTTGGGGAA
Band lengths:
222-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)