HsaINT0188579 @ hg19
Intron Retention
Gene
ENSG00000234284 | ZNF879
Description
zinc finger protein 879 [Source:HGNC Symbol;Acc:37273]
Coordinates
chr5:178455033-178461388:+
Coord C1 exon
chr5:178455033-178455128
Coord A exon
chr5:178455129-178459205
Coord C2 exon
chr5:178459206-178461388
Length
4077 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATATGTTTTGTCTACTTTAGGAT
3' ss Score
11.68
Exon sequences
Seq C1 exon
GGATTCTCTTTTCCAAGCCAAAGGTCATCTCCCAGTTAGAGCAAGGAGAAGACCCCTGGATGGTGGAGAGTGGAGTTCCCCAAGGCGCACATCTCG
Seq A exon
GTGAGTGACAGAGTAATTGGGAGATGGGCATAACATTTTCCCACTGCCAGGGCACAGCGAGGAGGCTGCGCTCAAGGGTCTCCTTGATGTGCCAGGCCAGGGGGAAATGCTGGGAAGGTAGATCCTTTCTCTTTTGATTACTTGATCCATCATGTTCAGAGGAGGGTTGAATTCTCCCAATATGGGTTGCACTGTTTTCAGATATCTTGTAATTTGCAGAATATGTAATACAGTATATCATGTGTAAAGGTTTATAATTCTTTTATCTTCCTTTATCCTTGCTTTTACTGGATTGATTCTTTTCCTAAATTATTTTCCTTAGTGGCTTGAACATTACATTGTTTTTTTTTAATCACTACAATACATTCCTCATAGTTTCATCTTGGAACCATCTTTTGCTTTGATTTCTTTGGTGTACAACTTAATTATACATGGTTCAAAAGGGGGAAAAAAGCAGATATATGTGTATGTATTTACATACATGAAAGAGGGAAAGAAGGTGTGACAAACGGTAACAGTTACGGAATGTGAGTGGGCTTCCGGATACTCATCACGCTATTCTTCTCTTTTCTGTGAAAATTTAGAAAATAATGCATCCCAGATCCCAGCTCCTAAGGCATGTCACTTTTTCCCTATACGCCCTTGGATGACTGCATTATCAGCTTCCGCATTCATTCTCCTGTGAATTCTGTCTATGCTTCTGGCAGTAGAGGAGGCCTCTGTTGAGCTTTACCACGTGTCTGGTGTTTTTTTCTCACCTGGGCAGGGCGTGGGCTTTCTGGGCCAGTTCACTTTTGCGTTTCCATTCGTGAACTCTGTCTTCACATTTTTCCCTTTGGCTCGACTAGAATATTTTCTTGGGTAACGGTTTTCAAAAAAGGTTCATGTGTGCAATATCTGTACGTGTCAAAAATCAGTTGTTTTTTTCTCTCCTCTGAGATTTGTTGTTTTGGATCTAGAATTCTGGCATCTGTTTTTTTTTTTTTTTTTCCTCTCTGCATTGTCCAAACTGCTCCACTGTCTTTGGGCATGGAGTGCTGCTGACAAATAATCCCATTAGTCAGATTCTATTTCCTGTATAGGTAACTTGTTTTTTCTTTTCTGTCTTCTCTTTGGAATCTTACAGGACATCATCTTTATCTTTGGAATTCAGACTTTTCATTAGGTTATATGAAAGAGTATTTTTTTTTCTTTGTTCTTTGGCACTTTACTGGCCTCTTTGCTTTGAAGATTCAGTCCTTCCTTTCATTTCAGGGATCTTTTGTTTCTGCCACATTCCACCAACAATGTGAGGCAATTGACTGCAAGAGTAGTGATACAATAAAATAGAAATTCAATCAGACATCTAGAAAATAAATAGATCTGTAGTAAGGACCAGAATGGTAGCTATAAATGAGTTTCAAATTTCGCTCTGAGCTTTCTGGTTGGCAAATAAATCATTGGTATCACATTGTCAGTGTTGTTTTACAAGCATTTTTAAAAATTAATTATTTTAAATTTGTACAAATTCTACATGCTGTTGTAAAAATAGGAGCAAAAAAAAGTCACCTGGAATTTTACCAACTATGATCAATTATTGTTGTTTATTACCCATTCAAACTGCATATTTGCTTAAATGTGTTTGTGTGTGAGAGACAGACACAGTGAGAGAGAGATACAGAAAGATTGATTATACAGTTTGTTCTTGATCCTGTTTTAATTGTGAATGTCATTCAGTTATTCAGCCCTCAGTGAATAGAGGCCTACCTCATTGAGAGGACTATATTGTATGTTAAGCCAATTAAACAGTCTTCCTTTTGGAAATTTTAGTTACCAGTTTTTCTCTGTTACTAATATTGCTAAGATGGTTATGGGAATACAAAGCCATAATATAAAGAGGCAAAGGTACCAAGAGTAAATCATCACAGTACAAAGACATGAGTATTGTGATTGAAAAGGCCAGGCATGTGGATTAAAAATCCACAAGGGATTTTTTGAAGCACTATTCAACTTCATTAAATTAAAATCAATGAAATTCCAACGAAGCACAAGTTACCATTTTTCCCTTATTACCAAGGATTAAGAAATAGATACCCAATGTGTTGCCACTGCTGTGAGTGATAAGCAGTATCGTTAGTGGGACTGCAACTGGTAGTCTTTCTGAGGATGGTCTGGTTTTATTAAAATCAATTCCAAGTGTAGAAATGTTAAGATAATTTCTGCACAGATAACTGTGCAGAGTTACAAAGATGTTGTAAAAGAATGTTTGTTATAACATGAGGCATCACTGCCACAAAAGGAGGAGGGTAAATGACTCTCAAAAAGGGATTTAGTAAATGATGATGTTTTCATGCATTGGACATATTATATTGCCATTAAAATGATGATGTCAGCCTACATTTATTGACATGGAGAGAAGCTCATGATTTTTAAGTGAAATGGAGGTAAAGGAAGCTTAATTTCAATCCATTTTAATTTTTTAATTAAGTGATTTTTTATATGCAGAAAATTCTGGTGAGCTATGTCCCACATATGATAGTGATTACAATTGCATGATGTATTTATGGGTGAGCTATGTGTTCATTTTTATAGTTTTCTGTGTTTTTCTTATGATGATATATTTCTTTTGTAGTTAAGAAAATAAAAGCTGTTTCATAAAATACAAAAGGAAATACATTTCTTTTGAATCAATGATTCCATTTCTTGTACTGTATCTTAAGTAACCAAAAAGGTAGACAAAAAATTACTCTCAATAATGTTCTTTTCTCCCAGTATTCCCCAATATCATGATAATGGTGTTGGTGTCCATTGAGTTGCCCAGACCAAAAGCTAGGAGTCATCCTTGAGTCCCCTCTTTCATTGCCTCTGCGCTCTATTCGTAGGTGAAGATACCTGCCAGTGCTACTTGCAGAACATCCCAGATACGCCCACCTCTTTCCGTCTCTTATCACCACATGCCAGTGTCAGCCACCACCATCTTCATCCAGGAAGAGTGCAGCGGCCTCATTGCCTGTTCTGCAGCTGCCCTTGTTCTCTTTCTCCCCGGCCCCATTACAGTTTGTTTTTCATATAGCAACCAGAGTGATCCTTTTTAAACAAAAACCACATCATTTCATGTCCCTTCTAGCCCTCAGTGATGCTGATGAACTTCCAATATCTTCCTGTATCCTAGAAAACGCTCCACAATATAGCCTGGCCCACCTCTTTTCCTCATCTGTGACACTCTCTTCTTGTTCACTCTGCTTCAGCTATCATGGACTGCTATATGTCCTGGAAAACAGGAAGCTATTCCTGCCTAGGGCCTTTGTGTTACTGTTCTTTCTGACTGGAATCACCTTTATACCCTAATTTTTGTCTGGCCAGCGCTTGTTATTTAGATCTCATCTTTAATTTCATTTTCTCATCACCCAGTTTAAAATAGTTGCCTATTCACTCTTATTACACAGTGCTTCGTTCGTGTTTTCTTACAGTTCTCATTGCTCCTTTGTACTGCTGTTGATTTGTTACTTGGTCATTGTCTGTATCACACTGCTGGAATGAAAACCTTGAGAGTAGGCCCTTGTCTGGCTTGTGCCCTGTCATTCTCAGAGTCTTAACGTTTGCGTAGCACACAGTAGGCACTCAGTAGGTATTACTTGAGTAAGTGGATGCCATTATTTACAGCATTCTGAGGAGGCCTAGAGCAGCACTGCTTGACATCCTGTGTTTGGCGGAGCTCTTCTCTTTCATTTAATTTTAGCCCCTCTGCAGTTTTTCCCTTGGTATTTACCTGAGTGCACTGGTAGCTGCCCTGGGAGATGACGCTGAGGGACACAGGCTGTGTTCAGAAGGGCCTCATAGCCTAGCGAGCTGTGCTTTGTTAATAGATCGAGCCTGGCTCTTCCTGTTGTCCCCTAATTTCCTCAGCCCACCTATATGTAGGTTTCTTCAGACCCTTCCCACCCACATGTCTGTCATCCTGCTTCCTTCCTCCTCTTCTTTTTCCCATCCTTTTCTAAGATTTCAAGGCTTTATATTTTTTAACTATCCTTGTGCGTTTTTATGTCACTTTTTAAAATTCTGAGTTCAAGAGAGACTTATATGTTTTGTCTACTTTAG
Seq C2 exon
GATGGGAAAGCTTGTTTGGAACCATAGTTTCTAAAGAAGAAAATCAGGAAGTCATGAAAAAACTCATAATTGATGGCACATTTGACTTCAAGTTGGAGAAGACCTACATAAATGAAGATAAGTTAGAGAAGCAACAAGGCAAAAAGAACAGACTTTTCAGTAAAGTGTTAGTTACCATCAAAAAAGTCTACATGAAGGAGAGGAGCTTTAAAGGTGTTGAATTTGGGAAAAATCTTGGTCTAAAATCATCGCTTATTAGAAAACCGAGAATAGTTTCCAGAGGAAGGAGACCCCGTTCACAGCAGTATTCAGTTCTCTTTAAACAACTGGGGGTCAACACAGTGCGTAAATGTTATAAATGTAATATCTGTGGGAAAATCTTCCTCCACAGTTCCTCCCTGAGTAAACACCAGAGAATCCACACTGGAGAGAAGCTCTATAAATGTAAGGAATGTAGGAAAGCCTTCAGCCAAAGCTCATCCCTAACTCAGCACTTGAGGGTTCATACAGGAGAGAAACCTTATATATGTAGTGAATGTGGAAAAGCCTTCAGTTTCACCACATCTCTTATTGGACACCAGAGAATGCATACTGGAGAGAGACCTTATAAATGCAAGGAATGTGGAAAAACATTTAAAGGTAGTTCATCTCTTAATAATCACCAGCGAATTCACACAGGAGAGAAGCCCTATAAGTGTAATGAATGTGGGAGGGCCTTCAGTCAGTGCTCATCTCTCATTCAGCACCACAGAATTCATACTGGGGAGAAACCGTATGAATGTACTCAGTGTGGGAAAGCCTTCACTTCAATATCGCGGCTAAGTAGGCACCATCGAATTCATACTGGAGAGAAACCCTTTCATTGTAACGAGTGTGGAAAAGTATTCAGCTATCACTCAGCCCTTATCATACATCAGAGAATTCACACTGGTGAGAAACCATATGCATGCAAAGAATGTGGGAAAGCCTTCAGCCAAAGCTCAGCTCTCATACAACATCAAAGAATTCACACTGGAGAAAAACCCTACAAATGTAATGAATGTGGGAAAGCCTTCTCTTGGATTTCACGGCTTAATATACATCACAGAATTCACACTGGAGAGAAACCATATAATTGTAAGGAATGTGGAAAAGCCTTCAGTTCCCACTCAGGCGTTAATACTCATCGAAAAATTCATACTGGAGAAAAACCTTATAAATGTAATGACTGTGAGAAAGCCTTCAACCAAAGCTCAGCTCTAATTCAGCACCAGAGAATTCATACTGGAGAGAAACCATATAATTGTAAAGTGTGTGGGAAAGCCTTCAGACAGAGTTCATCCCTTATGACACACATGAGAATTCATACAGGGGAAAAACCTTATAAATGTAAAGAATGTGGGAAGGCTTTTAGTCAGAGCTCATCTCTTACTAATCATCAAAGGACTCATAATTGAGAAAAACTGTATAAATGCATGTAGGAACTGAAGTTATATTCCATACTGAGTATCAAAAAATTCATTGTGGGGAGAAAGTGATGAAGAGTAGTTAATCATAGGTAAAACTTCAGCATTAGACCTCATCACACATCAGAGACTTCATGATGCAGGGTAACCTTGGGAATGCTAGAAAAGCTTCTATAAAATGTTTATTCATATGTTCTTAAGTTATTACCATGAAATGGAGAATTTTTAAGATTGCAGGGTTAGTATTTGATTGTCTAGTGATGTACGATAACAGCCACCAGCTTTCCTGAGCATCACTGGGAAGCCTGCTGTTTATGTACAAGTACAGCCATAAAATCCAGACACAGATAAATCTAGGAATCTATTTTTTGAAACTATTATGCAAGCCAGTGGTACTAGAAAGAATGTTTTAGAAAAGAAATATGTACAGGTGACCCATAGCTACCTCACTGTCACTAAAATGTTTTTTAATAATCTTAAAGCAGATTCTGCACTTCATGGTAAAGACTTTGAATTGTTTCTCTGCTTTCTAAGCCATTCACCTGAGAAGAAAATCACTCCATAAACTATGCAGACGTACTGTCTTTGCGTTTTCTTCCTGACTACTTGTTCCAAACTCTGAGTCAGATCTAAAGTCACTTTAAGTCACAGAACGCATGGTATTTCACTTGTTTTTCTCATTAAAAGTGATTACCTTTGCTGTATTAAATTGATAAGTAAAGGTCATTCAGACAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234284-ZNF879:NM_001136116:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF127602=Zn_Tnp_IS1595=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)