MmuALTD0016312-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000020472 | Zkscan17
Description
zinc finger with KRAB and SCAN domains 17 [Source:MGI Symbol;Acc:MGI:2679270]
Coordinates
chr11:59502920-59503763:-
Coord C1 exon
chr11:59503677-59503763
Coord A exon
chr11:59503384-59503676
Coord C2 exon
chr11:59502920-59503100
Length
293 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
GCTGCTTTCTGGGATTGCAGCTC
3' ss Score
4.23
Exon sequences
Seq C1 exon
CCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGG
Seq A exon
GTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGCTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGAGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
Seq C2 exon
CTCAAGCACTGTGAAGACCCGGTGGTGATTGACGATGGCGACGGGCCTGCTGCGCCTCAGGACCTGGAACAAGAACGAATGTCAGCAGAGTCCCAGAGCTACCCTGATGCCCCGCCTGGGGCTCTAGTACAGGGCACTGGGCTTCTAAGCAGATCACCAGGCCAGCCTAGCGAAGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020472-11-15,12-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.885
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTGCCCACGAGTCTT
R:
CTAAGTCTTCGCTAGGCTGGC
Band lengths:
268-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types