RnoALTD0034522-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45848669-45849499:-
Coord C1 exon
chr10:45849413-45849499
Coord A exon
chr10:45849120-45849412
Coord C2 exon
chr10:45848669-45848846
Length
293 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TGCTTTCTCTGGGATTGCAGCTC
3' ss Score
5.37
Exon sequences
Seq C1 exon
CCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGCGAGGAGCCCAGGAAAATGCGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGG
Seq A exon
GTGAGCCTCCCAGCCCAGAGTCCTCTCGACGCCTCTTCCGCCGGTTCCGCTACCAGGAGGCCGCAGGCCCTCGGGAGGCCCTGCAGCGCCTCTGGGAGCTGTGCCGGGGCTGGCTGAGGCTCGAAAGGCACACGAAGGAGCAGATCCTGGAACTACTGGTGCTGGAGCAGTTCTTGGCTATCCTGCCGTGGGAGATCCAGAGCTGGGTGCGTGCCCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCTGCAGTAGAGGCTCTGGAACGGGAGCCAGGGAGACCCTGGCAGTGG
Seq C2 exon
CTCAAGCACTGTGAAGACCCCGTGGTAATTGATGACGGTGATGGGCCTGCGCCTCAGGATCTAGAACAAGAACGAATGTCTGCAGAGTCCCAGAGCAACCCTGATGCCCTGCCGGGGGCTCTAGCACAGGACCCTGGGCTCCTAAGCAGATCGCCAGGCCAGCCTAGTGAAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129-9-6,10-6,11-6,12-6-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.867
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCCACGAGTCTTGG
R:
CTGGGTCTTCACTAGGCTGGC
Band lengths:
263-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]