MmuALTD0016313-2/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21486656-21488443:-
Coord C1 exon
chr13:21488308-21488443
Coord A exon
chr13:21488056-21488307
Coord C2 exon
chr13:21486656-21486775
Length
252 bp
Sequences
Splice sites
5' ss Seq
TGGGTGCGC
5' ss Score
4.4
3' ss Seq
ACTGAATGACTGACTTCCAGGTT
3' ss Score
4.68
Exon sequences
Seq C1 exon
TCTTTTACAGAAATACAACTCACAGCTACAGTGAAACGGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCTTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAG
Seq A exon
GTGGAACAAGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGAGGCAGCCGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTCTGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGG
Seq C2 exon
GTTCCAGATGATGACGATGGGCAGGAACTCCTTTGCTCCAAGGCAGTGCTGTTGACATCAGCTCAGGGCTCAGAAAGTAGCCAGATGGAGCCCGTGGAGCCTCTGCTGAAGCAGGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327-4-5,5-5,6-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=0.598
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTACAGAAATACAACTCACAGC
R:
GCTCCACGGGCTCCATCT
Band lengths:
236-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: