MmuALTD0016334-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:57423252-57430529:-
Coord C1 exon
chr14:57430429-57430529
Coord A exon
chr14:57430171-57430428
Coord C2 exon
chr14:57423252-57423700
Length
258 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
TCCTCTTCTCTCTCTTAAAGATT
3' ss Score
10.76
Exon sequences
Seq C1 exon
CGCTAAAGCCGGGACTGGACCGAGCGGAGTTGTGCGTGTCGCCGAAGGGGGGTGGGCCGGGGGAGGGGAGGTTCGTTCCGCGGAGCTGCAGCCAGAACCCG
Seq A exon
GTGAGGCTTCTCCCCGCCGTCTTTCCTGTCGAGGGCCGCGGAGAGTGGGGGTGGCTGGGAGCAGCGCAGCCTCGGGAGGAGGAGGCGGAGGCGGGGGCGACTGGGGAGGCGGAGATGGGTGAGGGCAGCGTCGGGAGCCTCCCACCGAGCCGGGCTTAACAGCCCGCGGCGGCCGGTGTCGCGGCTGCTGCGTCGGGGCCTGAGGGTGCGCTGGGGGCCGCGCTGATGTCCAGGGCGGCTTCGCGTGCGGCCGGAGGG
Seq C2 exon
ATTCATCAGTGGGAAGACTAGTTGACTGTACATTGGACTTGGACATGGAAGCTCATCTCGCAGATATGGAATCATCTGGGGGTCCAACTAGTTCTTTAGCCGGTACATCTAGAAACACACATGTGGAAGATGATGATGTTGTATTTATTGAATCAGTACAGCCTCCAATTTGTGCTCCAGCAATACCTAATGAAAGAAACTTTGTATTTGCTTCCTCAAAACATGAAAATCCACCAGGAACTGATTCCACAATTTCCCCTTCTTGGAGAGATTTGACTTCTCAGAAGGGAAATCTATGTGAAACAATTGTAATTGATGATGAAGGGGACACAGACACAAATGGAGGGGAGGAGAAAAATCCTACCGACTTTATTGAATGGGGACCGAATGGAAATAAAAGTAGTACCAAAAATGTGGATTTCCCCATTGCCAGTCTATCAAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123-0-6,2-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.889
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGGGAGGTTCGTTCC
R:
TCCAAGAAGGGGAAATTGTGGA
Band lengths:
308-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: