MmuEX0053948 @ mm9
Exon Skipping
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:57428241-57429696:-
Coord C1 exon
chr14:57429577-57429696
Coord A exon
chr14:57429378-57429433
Coord C2 exon
chr14:57428241-57428320
Length
56 bp
Sequences
Splice sites
3' ss Seq
TAAATTTCTTTTTATACTAGGAT
3' ss Score
7.71
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATTCGAGGACGCGTTTACTCTTCGACTCAGCTGCGCGCTCTACTCATAATTCTGAAACTGGAAAGAACATATGAGCTTGGCCTGCTGTCGTTTAGTTGATCTATTGTTTATTTGGAGAAG
Seq A exon
GATCTTCAAGCTACTTTGGTGAAGGATTTGACAGGAATAAGGAAAACATCTCCATT
Seq C2 exon
AGAGAGAGAGAGAGAGCCTGCCTTCTTTCCATCCTTCCTGAGGAAGCCAGAAGAAGGTGTTGGGTCCACTGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123-'3-2,'3-1,4-2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGACGCGTTTACTCTTCG
R:
GGCAGGCTCTCTCTCTCTCTC
Band lengths:
139-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: