MmuEX0053948 @ mm10
Exon Skipping
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:56808559-56810596:-
Coord C1 exon
chr14:56810541-56810596
Coord A exon
chr14:56809404-56809483
Coord C2 exon
chr14:56808559-56808604
Length
80 bp
Sequences
Splice sites
3' ss Seq
TACTTTTAAAAAATATTTAGAGA
3' ss Score
2.07
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
GATCTTCAAGCTACTTTGGTGAAGGATTTGACAGGAATAAGGAAAACATCTCCATT
Seq A exon
AGAGAGAGAGAGAGAGCCTGCCTTCTTTCCATCCTTCCTGAGGAAGCCAGAAGAAGGTGTTGGGTCCACTGGAGCTGGAG
Seq C2 exon
GTGCCTGGAAGATCCACCTTCCACTTCCTGCCCAACTATTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123-'7-7,'7-6,8-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAGCTACTTTGGTGAAGGA
R:
CTGGTCAATAGTTGGGCAGGA
Band lengths:
100-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types