MmuINT1035873 @ mm10
Intron Retention
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:56804415-56810859:-
Coord C1 exon
chr14:56810740-56810859
Coord A exon
chr14:56804864-56810739
Coord C2 exon
chr14:56804415-56804863
Length
5876 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
TCCTCTTCTCTCTCTTAAAGATT
3' ss Score
10.76
Exon sequences
Seq C1 exon
ATTCGAGGACGCGTTTACTCTTCGACTCAGCTGCGCGCTCTACTCATAATTCTGAAACTGGAAAGAACATATGAGCTTGGCCTGCTGTCGTTTAGTTGATCTATTGTTTATTTGGAGAAG
Seq A exon
GTTGGTAGAACAGCTTGGGAATAACTTCACCTTGACTTATTTATTTCCTTTGGCGTTCAGGGTTTGGTGCTACCTCGGAGCTGTTGATGTTCACTGTATGTATGTGTTTTGGGTGTTTGTTTGTAAATTTCTTTTTATACTAGGATCTTCAAGCTACTTTGGTGAAGGATTTGACAGGAATAAGGAAAACATCTCCATTGTGAGTCATTTTGCGTAGCTTTCCTGCTTAAACCACTAGGATAGACTTTTCTATTTTGTCGAAGTGAAGAGTTGCTGCCTGAGTGATTTCTGCTGAGAAAGCCAAGCCAGTGTGATCTGTAGTGTGTTAGTGGGTACTACTAACATGGCTGTCTTCTCAGATTCCTAAATAAGACTATGTTCTTAGTCATAAGATGCTGTGCACTTAACATTTTTGTGTTCCTTTCTAGGAGATTTCTTTAATTTCTTGTATTTTTAAACCACTAAGCAGTTATTTATTTTTGAAAAAGCTTGTTTGTTTGTTTGTTTAAAATGTTTTCACCATTGCTCTCTTCAGACACACCAGAAGAGGGCATCAGACCCCATTATAGATGGTTGGGAGCCACTATGTGGTTGCTGGGATTGAACTCAGGACCTCTAGAAGAGTAGTCAGTGCTCTTAACCACTGAGCCATCTCTTCAGCCCACACTAAACAGTTATTTTAAATAAAGATTAAATATTTTTAAAAATTACTGACATGTTTTAAGATGGAGGACAAACGAATTACAAGGGTTTTTTGTTTTTCAGTTTTAAAAAGATTATATGTTACATATATAGGTGTTTTGCTTCATGTATATCTGTGTGCCACTTGGCTGCAGTGCTCAAGAAGTTCAGAAGAAGGTAGAGGATCCATTAGAACTAGACAGCAAGTTATGAACTGCACTTAGGCGTATGGGGACTCAAACCCTGGTCCCTTGGAAGAACAGCTGATGCTCTTAACCACAGAGCCATCTCTCCAGCACTGTGATTTCTTATATAGTACTTCGTAGACATGCACTTCTTTTTTAATTTCTTTCTTTTTTTTTTAAAGATTTATTTATTTTATATATGTGAATACACTGTCGTTATCTTCAGACACACCAGAAGAGGGCACCAGATCTCATACAGATGGTTGTGAGCCACTGTGTAGTCTCTGGGAATTAAACTTTGGACCTCTGGAAGAGCAGCCGGTGCTCTAAACTACTGAGCCATCTCTCCAGCCCCCAGACATGTATTTCTTACTTTTAAAAAATATTTAGAGAGAGAGAGAGAGAGCCTGCCTTCTTTCCATCCTTCCTGAGGAAGCCAGAAGAAGGTGTTGGGTCCACTGGAGCTGGAGGTACATGTAGTTATGTTCTAGGATCAGCTGGGTTCTGGGATTAGAACTCTGGTCCTCTAGAAAAGCAGTAGATATCCTTAGCTGCTGAGACATCACTCCAGTCCCCATCAGATGTACCGTTTTAAAGTTAGGGCAGTGTCAGACTGTAGAATTCTGTCTGCCTGTTAAGATTGGAGGTTGCACTGGGTGTGGGTGCATTTACAGAGCAAGTTCCAGGACAGCCAGAGTTAAACAGCAAAACCCTGTCTTGGAAGAGAAATTGAAAAAGGCAACTGAGGGGCTGGAGCATGTTGGTACTCTTGTGAGGGACCTGGGCTTGAGTCCCAGCACTTCCATGACAGCTTGCAATAGTCTCTAACTCCAGTTCAGGGGACCTGATGCCTCTTCTGATCTCCTCAGGCTTCCTACATGCTCATGATGCACATAAATACACTCAGGAACACCCACAGAATTAAATAAGCAATTTGAAAAATAGATACACTTTAAAACAGTGGTTCTCACCAGACTGTGGTAGCACACATCTTTAATCCCAGCACTTGGGAGACAGTAAATTTGAGGCCAGCCTGGTCTACAGAGCAAGTTCCAGGACAGCCAGGACTACTATGCAGAGAGACCTGTATAGTGGGACTATCTTGGACCCACCAAAGATATAAATAACTCAAGGGTTTATTAATATTTTAAAGCTCCATTCTTTTGCTGAGCAGTCTCCTGACTACTCCTGGCATTATTTCCTTCTGTGTGGCCAGATCTACATCTTACACTCAACTTTGGTCTGTCTGTTTACTTCCTTGTGCGCTAGGTGCCTGGAAGATCCACCTTCCACTTCCTGCCCAACTATTGACCAGGTGAGGAAGATGGAATATTTACAGAACATGAGACTAGTGATGGGCCATAGAATTAACAGTTCCCAGATCCTGCCAGCATTTAGCTCTCTGCCAGTACAAAATGAATGACTGAATATACAGGGACATACCTTCACATAGTATACCCTAACAACACTGTCCCAAAAAAATACAACAACAACAAACAAAACCCACAGTGGTTCCAAACTTACCTAATGCTTTGACCCTTTATCACAGTTCCTCGTGTTGTGGTAACTCCTAACCATAAATTATTTTTGTTGCTACTTAATACTGTAATTTTGCTATTGTTAGGAGTTGTAAATATTTTTGAAGATAGAGATTTACCAAAGGTGTTTCATCCTATAGGTTGAGAACCCCTGCTTTAAAAGTTCAAAGCCAGAGGGTGCAGAGAGGGCTCAGCTAGTCTCTCCCTGTAGCCCAGAACACCCATACACAGTCAACACAAAAAAGAGCATGGCTATTTCTCTGTATAGTGCTGGCTGTCCTGGAACTTACTTTGTAGACCAGAGTGGGTTCAAACTCAAGAGATCGCCTGCCCGTGCCTTTTAAGTGCTGTGTGTGCCAGAAAATTTCTAGATTCCATCTCAGTTAAATCTGCTGGTTTCTTGTGAATCATAGTCAAGTTTTCAGACCCAGCTAACTGGGATCTACAGATTTAATTATGCCACACAAATGATCCTGTTAGTCTTCGCTTCCTTCTGAACATAAACCATGCTTTTGGCCGCTGCATTTTTCTTCCTACTCTTGTATTTAATAGTCTGTTGTGAAGGGAAGCTAGGGCAGAAGCCTAAAGGCAGAAACTGCATTTGCCTGACTTCTACAACCTAGAATAAATTGTCCCTGGTGGTACCACCCCCAGTGGGCTGGGCCCTTCTACCTTATTCATCAATCAAGGAATACCCCACAGGCTTGCCTACAGGCTAGTCTGGTATTTTCTACATTGAGGTCTTCCTTCCCTGGTGACTTAAGCTTGTGTCAAGTTAACAAAAAAGGAAACTAACCAGTGCAAATCTCTCTACCTTGGCTATTAAGCTTTTAATTTTCACCAGCTCTTTTTGAGATACAATTTTTTAATGTTTACTAATGTTATCTATGAGATTTATTATTTGAAAAAAATCTGCAAATAAAAACAACGTAACAGGGCTGGAGAGATGGTTCAGTGGTTGGGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCTCAGCAACCAAGTGGTGGCTCACGGCCATCTGTAATGAGATCTGATGCCCTCTTCTGGGGTGTCTAAAGACAGCTACAGTGTACTTACATATAATAATGGATAAATCCTTTTTCTTTTCCAATTTTTTATTAGGTATTTTCTTCATTTACATTTCAGATGCTATCCCGAAAGTTCCTCATACTCCCCCCCCCCATGGATAAATCTTTAAAAAAATGAAAATAAACCACAATATAACAAATAGATCCAAGTTCTTTTTTTTATTTTTGAAGATTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCTGAAGAACAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTTGAAGATTTTTTTAATTAATTAATTTATTTATTTATTTTTGTTTTTTCGAGACAGGGTTTCTCTGTTTAGTCTTGGCTGTCCTGGAATTCACTTTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCCGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACTAAGCCCAGCTTAAAGATTTATTTATTATTATATGTAAATACACTGTAGCTGTCTTTAGACACACCAGAAGAGGGCATCGTATCTCATTATGGGTGGTTGTGAGCCACCATGTGGTTCCTGGGATTTGAATTCCGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCACCGAGCCATTTCACCAGCCCTAGATCCAAGTTCTAAACAACTCATTGAAAATGACAATTGAACGAGATGAGGATGTGACTGCTCCAAGGAGTGGTTGAGAAGGTTTTTATTGTAGATGTGAGAGAGAGTACAGCCAGAAGTATCTGGAAGAGTCTATAGAGCAGGGAGAGAAAGTAGACCGAACATGGGCAGCAGAATAGAATGGGCCATGGGGGTGAAAGGTAGGTAGCTAGAGAGGGTGCAGAAGAGAAAGGACCTAGAGGACACATGGCCAACATGGCAGGGCTGTCTGGGAGAATGGAGAAGTTAAGGGTAAGGGGCAGGGTGAGAAGAGCAGAGAGGAGCTACAGGTACTGAGTGAGCCTGGAAGTCAGCAGACATTTTTGTATGCTAGTAGGTACCACAGCCATTTGTCCAGAGTTTTATTTTGTACCTGACAATAATTGAGATGTAATTTAAATTTTTTTGTTTGTTTGGTTGGTTTGGTTTGGTTTTGACTTTTCAAGACAAGGTTTTTCTGTATAGCCTTGGTTGTGCTGGAATTTGTTTTATAGACCAACCTGGTCTTGAACTCAGAGACATTCAAGCTTCTATTTCTGGAGGCCTGGGATTAAAGGTATGTGCTACTACCACCAACAGGATTTTTTTGTTTTATGGTCTTTTGCTTTTTTGTTGTTTTGAGACAAGGTCTCTTTATCTAGCTAGACCTGGCTGTACTGGAACTTGCTAAGTCAGTGGTTCCCAACCTTCTGATGCAATGACACTACCCATAAAATTATTTTGTTGCTACTTCATAACTATAGTTTTGCTACTCTTATAAATCATAATTTAGATAACTGATATGCAAGTCCAAAGGTGTCATGGCCCTCAGATTGAGAACTACCATGCTAAGTAGACTCCAGGCTGGCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTTCTTTTTCTTTTTTTAACATTTTAAAATTTATTTAATTTTATTTTATGTACATTAGTGTTTTGACTGCAAAGATGTCTATATGAGGGTGTTGGATCCCTGGAACAGGAATTACAGATAGTTGTGAGCTGCCATGTGGGTGTTGGGAATTGAACCCAGGTCCTCTGGAAGAGCAGCCAATGCTCTTAACCACTGAGCCATCTTTCTAGCCCCCTCAAGTTTATTTGTTTAACTTGTGTGTCTGTGTGATTATGTGAGTACAAGTGTCTGTGGAGTTTAGAAGATGTTGGAGTCTCTGGAGGTGGAGTTCCAGGCAGCTGTGATTCTTCTGGTATGACTGCTAAAAACTGAATGGAGGTCTTATATGAATGAGACTAATAGATACTCCTAACTGCCAAGCAATCTCTTCAGCCCAAATTTTGTTATTTTAAATTCAAAGAAAACTTAGGCTGTTTTTGTTGTGAGTAGAAAGCACAAAGTAAGAAGAATTGACCTTTTTAAGGACTATCAAATTGCATATTTTCTATCAAACTCCACAAAAAAGTGGTTAACAGGAAAAACAGAATGAGAATCACATAAATAGTTAATTATCTATTATTATTTATAAATAAATAAAAACATTAAAATTGTTGTGAAATTAAAAATCCTCTTCTCTCTCTTAAAG
Seq C2 exon
ATTCATCAGTGGGAAGACTAGTTGACTGTACATTGGACTTGGACATGGAAGCTCATCTCGCAGATATGGAATCATCTGGGGGTCCAACTAGTTCTTTAGCCGGTACATCTAGAAACACACATGTGGAAGATGATGATGTTGTATTTATTGAATCAGTACAGCCTCCAATTTGTGCTCCAGCAATACCTAATGAAAGAAACTTTGTATTTGCTTCCTCAAAACATGAAAATCCACCAGGAACTGATTCCACAATTTCCCCTTCTTGGAGAGATTTGACTTCTCAGAAGGGAAATCTATGTGAAACAATTGTAATTGATGATGAAGGGGACACAGACACAAATGGAGGGGAGGAGAAAAATCCTACCGACTTTATTGAATGGGGACCGAATGGAAATAAAAGTAGTACCAAAAATGTGGATTTCCCCATTGCCAGTCTATCAAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123:ENSMUST00000173954:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.889
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types