BtaINT0164795 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36494836-36503146:+
Coord C1 exon
chr12:36494836-36494905
Coord A exon
chr12:36494906-36502641
Coord C2 exon
chr12:36502642-36503146
Length
7736 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TTTTTTCTTTTCTGTTACAGGTT
3' ss Score
13.22
Exon sequences
Seq C1 exon
GGCCAGGAATCACCTTCAGGACAGTCTGGTGATAGTTCGGTGATAGTAATTAAGGAGGAAAGCGTCGACG
Seq A exon
GTGAGTAATTTTACCCTGCGTGTCTGTGGAATACAGTTAGCGCAGTACTAGAGTGTGCTTCCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATACATGGACTGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACACTACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAGTCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTGTGGGGTCGCACAGAATGGGACATGACTGAAGCGACTTAGCAGCAGCAGCAGAGTGTGCTTCTGTGGAACTTACCTTTCTCTTACCTTGAAGGCAGAGAGTTAGTTTCTGGAGTGGACCTTGTCCCCAGAGCCAAGCCAGGGAAGTCCCTGGGAAAGCATGGGGAGTGCCTGCTCATATTTACACCACTGGTGTTCTCTTAGAGTTCTAAGATGTTCCATTTTTAATGCTTTCTTAACATTTTTTTTGCTTTCTAATGGTTAGAAATAATTTTTTCCATACTGTTGAATTAACTAGACTGATTGAATCTTATCGTTTTCTAAGGTTGATGGACACAATACTTTGTGTGTGTGTTTGTCTTATATTTGAGGAAGATTTGTGTTTCTGTATCCTGATAAAACTCTGGCAAGCATCACATCAGGAGATTTTTTTTTTTTTAAGAGATAATCTAGTTCTTACCCTAGTAGCGATTCTCATTGACCACCGAATTACTAAATTGGTAGTGACAGTCTCCATTACCAAGTTGATGTGTGTTTTTTTCTTGTTACTAAAAAGTAACCTAAGTGCTGTTCATTTTGGTACAATAAAATGCCCAGTTCCCTGTCACCTGTTGGCGTTAATGACTTTAACACCAATCCTTGCCTGAGTCAATTTTGTAAAGTGTCTCAAAATGATTTTTTTAAAAAAATCTCTGATTCTACATTTATTATCTGGGATTCTGTACAGTCTTAGATCCTGCCTATTTTGTCCTTCCAGCTGGTCAGTTTTTCACCAGTCATCAAAAAGAAACTTGTGAATACTGCTCTTTCTCATAGTATTATTCCTGCCTTCCCTCTGCTGTTGTTGCTTCTTGCCAGACTCGACTGTGCACTTACTCTGATATGCTTCATGGCACATTTCATTAGTTAGACAGCTTTTAGGAATGGATATTGTTTTGACTGGGTGATTTTCATAGGATACCTGAAATGATATTTCAGATTATGTGGTAGTTGTGTGAGGTGAAGGAATGTGGACAGGGTTCTAGAGCTATGAGGGACTTTATTAGGAAAAGGGAACTAGTGGAGACTAAAAGATTGGAAGGATAACAAATCGCTGGCTCAGTTATTACCACTTAGAAAATCCACTTTTCTCAACAGCAGGTTCCTAGCATAGGTGAGCACAGTGTGGGAAGGACTAGGTTTAGTGCCAGTCAGATTTCATACCTGGTTTGTATCTCTGCTCTCTTATTACTTTGGCAAGTGCAAACTAAATAAGAGTCAATAACTGAACCTTTATAAATGCACATCTTATTCAATTAAATACACTTTTTTATCCACATTTTATACGTGAGTAAATTGTGTCTGTGTTCCCAATTGCTATGAAGATTGTACAGTGCCTAGCCCGTAAGTTATGTGAAACACACACACACACATTGTTAACAGTAGCTACAATTCTTGTGTTTTTTGTTTTCTGATATTTCCTCAGCTTTATTTTTCAGTCCTTTTACTGAGTTTTCCATTTTTGGTAAGCTTTTTATTTCTAGAAGTTCTTTTTTAATACTAGAAATAGCAATTTTTTATGGTCTTTTGCTTGTCATGTGTCCGGCTAGAGTTCTTGATAGTTGTGTGGATTTCGATTTTGTTTTCTTTTTCCTGCACTTTTCTCTTTCTCCTTTTTTTCTTTTAACAACTTTTTCTTTTACATTATTTTTTATTGGAGTATAGTTATGTTTACAGCATTGTGTTAGTTTCTACTGTACAGCAAAGTGAATCAGCTATACCTGTATATATACATATATCCCCTCTTTTTTTGTATTTCCTTTCCATTTAGGTCACTGCAGAGCATTGAGTAGAGTTTAGTGAACTGTACAGTAGGTTCTCAGTTATCTATTTTATGCACAGTATCAATAGTATATATATATGTCAGGACTGTTTTTCTTATTTGAGGATTTCTTCAGATATTTTATAATCCTTGGTTGGTCTACTCATGGTTAAGAATTGAGAAATAGAAAATAGATTAGAAAAATGAGTGGAATGTTTCAACTTGGAGCTTCACTGTAGGATGAATCTTTTTAGCCAATTGATGGAGACCCTCTGAAGTCATTATCTTTAGGTCTTTCATTTTGGGGGGTTCCTAATTCCACAGAAAGGAGTGTTTCTGAGAAAGAAGTTTTCTGGGGAAGAGTCTGCTGCTTGAAAGATTGAAGTCTGGATGCCCGCTCTCTGGAAATCAGCCGGGAAAGGGAGCATTTCAAATACATGATATTGAAGCATTCACCAGTGCCTGGTAAACCTGAAACAAAGATCTTTTGTTCTATCCTCTCCAAAGAAGAGAAGTCTAGAACTTGGGCCAGAAAGGGGGAAGACCTGTGATCATCAAAGTGAGAAAGGGAAGGGACCTGGAATTTCACATCCTCCTTGTTTTAGCTGTCTGCTCCCTATTCCAGTGATATCAGGAGTTACAGGCTTTGAGCCTTTTGATGATTCCGCAGCTTAAGTCAGAGGTTTCTCAGTTTTTTCCTTTACTGTTTTAGAGTTAGGCTGTCTCAGGCAGAGTTGGTTAACTATTCATCCACCTGCTCTTCAGCTTATCAGATTTTTTGCTTTTGTTTCTTCTTTAGTTTTTCATTGTGAGTAGGAACTTTACTGTCATTTATGGGGATTTTAGAAGGGATTGAAGTTAGTTTTGTGTGATCAATCTACCGTCTCTTAAGTGCCTATTAGGTACTTAAGTAGTTCTCCTGCTGTTTGTTGTGATTGTTCATTTGATTCTTCCTTTTCCTGTCTCTTTACAGTTGTGAGTAAAACCTCGAGAATCATCATACACCTTTATTTAGTTTTTGATTTTAAATGGGAATCCTTGTAACAGGAAGCTAACTTTGAAATTGATGTTATTTTTATGTAAATATACAAATATTTTTATATTACAAAAGATCTGTTACAGTATAAGTTCAGAGATGCCCTAGAATGTGTTCTAGAACTTACTAAGTGATCAACAAATTTTTATAGCATGCGTCCTTTATGTTTCATAGAGCCTTGAAGATATAGATGTGGTAATAGGTAGCCAAAAATGAACCTTTGGAGCAGTGATTAAATATTTGAAAATACTTTCTTGGTGATTTTAATATTTGAAGGCTTGTGAGCAGGTTTGTTTACCTTTATCATCAAGTGCTAATCTTGTCATATTAATAACACCATTTCTATTTTAGCTACTGTTTTTTGAGTCATTTTAATATGTAAGTTCTACCAAATTGTGCATAAACATAATTGAGTATTGACTGGCTAGTAAAGTATTCAACTTTTTTTAATTGAAGGTGATCTCAGGAAATTAATGATACTGAGTTGTAACTTAAGAATTCAGCAGACATTTTTGCAGCTTTAAAAAGGCATATTTAAAAAACTATAACACTGAACTGCATACTTAAAAATGATTAAAATAGCATTTTATGTTATATATATTTTAGTGTAATCTTTTGAAAAGATAACTAGCAATCGTTAGGAAATAAAAACTAGAATAAAAGTAAACACAATAGGGCAAACGACCCTAATTTGTGTCTTTGTTTTAGTGTTAACTCTTACCTTTACCGATAATGAAATACCTTCTTAACGTTGCAAGGTTATTACCTACAGCCTAGAGATAATTTGCATATAAGAGTCTTGCTTGGGTTTCAGCCTAGTTTTTTAGTTAGGCTGAAATTCTAGTCCAATTTTTTTTTTCTCTTGGCTGCACTGTGAGGCTTGTGGGAAGTCACTTCCCTGACCAGGGATTGAGTCCTGGGCCACAGCAGCGAAAACCTGGAATCCTAACCACTGAGCAACCAGGGAACTCCCATTAGATTCCACACATCTCTGTGTGGATATTCCTTTAATTTCATATTAATTTTCATTGTATCGAGATGAAAATTAAATAGTTGTAGATGAATAAGATACCACAGGAAGGGAACTTCCCTGGTGGTCCAGGAGTTAGGACTTCGCCTTCCAATGTAGGGGGTGAAGGTTCAATCCCTGTTTAGGGAGCTAAGATCCCGTATACATCTTGGCCAGAAAACCAAAGCATGAAACAGAAGCAGCATTGTAACACATTCAATAAAGATTTTTAACAAAAATACACCACTGCTGCTACTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACTGCAGCCCACCAGGCTCGCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCGGTCCTGTCCGACTCCCAGCGACCCCATGGACTGCAGCCTACCATGATCCTCTGTCCGTGGGATTTTCCAGGCACGATTACTGGAGTGGGGTGCCCTTGCCTTCTCAATAAGATACCACAGGAAGACAAAATATTTACTGATTAGATACCCTGGCATTCTGAAGGAGATCAACCGTGGGATTTCTTTGGAGGAATGATGCTCAAACTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAAGAGGAGAAGGGGACAACAGAGGATGAGATGGCTGGATGGCATCACTGACTTGATGGACGTGAGTCTGAGTGAACTCCGGGAGTTGTTGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTCGGACATGACTGAGCGACTGATCTGATCTGAGACATTTGTTGAAATCCTAGGGTGGAGCCAAAGTATTTGCCTAAATACCTTCTCGGTAGAGAGAGATTTATCATTTTTGCACTCTTTAATATGATCCAGTCAGAGACCAGGGACCTGTATGTCCAGTTATCACAATAAAAACCTCAGTCTTTTTTTTTTATCCCCATTTATAGTATGAACAAGTTCACAGTTTAGAAAAGTAAAACTCAATTAAGTGAGGTAATTTGCTTAGTGCCTTAGCTAAACTTTAACCTTTTCTCTTTTTGGATAATATCATAGAAATATTTAAAACTTTTTTGTAGGCTTATGTTTATAGAATTAAGACAATGATAATTAAAGTATATAAACAGTGACTTTTAATAGTGGTTAGGGTTAGGTTTCAGAGAAGGCCCTGGCATCCCACTCCAGTACTCTTGCCTGGAAACTCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTGGGAGTCGGACATGACTGAGCGACTTCTCTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGCGAGCCTGGTGAGCTGCTGTCTACGGGGTCACACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGGGTTGGGTTTTAACTTTTTTACAACCTGAAATTTGAAAATAGATAAATACTTAATCTTTTTTTCAGAAATAGATGACTGGAATGAGCTGAGCATAAAGAATCCCCTATTATTTTCTTTGGGAAGATCAAGATAGAACCTAACAGCCACCAGAGGGCACCATGGAGTCAGCTGTTGCTCTTCCCCAGAAATTGTTCTTTTCCTTTTTAGATTTATTCAAATACAGAAAGAACTAACAAGAATTTGTGTGTGTGTAAATAACAGTTCTTAAATTTCATGATTTAGTTTAGGCGAGTTATTGCCTCTTTCATTTGAAAATCAACCACATTATAAGCTTATTGGATAGGTGTTAATTCTGATCCTAATTTTCATATTTCCTTTATAACCCTTTTAACTGGTTCCTTAGATTTGTTATTTATCTTTGAAGTACAGTTACATGACTGTTAATTTTGTTTCATCTTAATAAAACAAGGACTTAAGAAATTGTATACAATAATTGCATATAATGTGGTGTCTATGAAATAGATTATAGAGTCAGATTTCTTGGATTTGACTTCTGATTCCACCCTTTCCAGCAGTGGAGACTTGGGCAGGCCAGGCAGATTACTTACCGTCTTCTGAGTCTTAGTTTCCTGATCAGTAAAATGAGACAAAGAATAGTTCCTACCTCACTTATTTAAGCATTTACCGAATTACTATATTTAATGATACAGCACCCATTAAGAATAAACATTATCTATTGTATGACTAAGTACTATCACTTAAAATTAGTTGGGAAAATTTTAGAATAGAATGTTACTTAGCATATTTCAGTATGAAATGTTTAAAATTGAATGATGACTGCTGTATGAGTTCTCTTAATTATTCAGTACCCCTACAGATCCCACCTCTTTCACTGTCTTGAGCTTCTAAGAAAATTGAAACCAGCGTTTGTAAACTTAGCTCAGCTTTCCATCTATTGTTTCTACATACTTATATACGTTCCAGTTATAATTGGACAAACGCTTGAACAACATGGGTTTGAACTGCCCAGATCCACTTAATACATAGATTTTTTTCAGTAAATACTGTAGTATTGCAGGATCCAGGGTTGGTTGAATCTGTGGATGTGGAACCTCAGATACGGAGGGCCAACTGTAGGACTTGAGCCTCTGTGGATATCCTGGGACCAAACCCCCTGTGGGTACTGAGGGACAGCCATACACTTAACTTTTCCCTCTTGCTTTTGAGATAAAGGTGATTTCTTGTTCATGATTAGCTTCATTACCACCTGGTGCTGTGCATATCCTCATCCTCCTCTTGTCTCATCTGCTTTGAGAGCTTTGCTCCATTGATCTTTCACTTCTCCAAATTCTTCCAATTATTTGGATCTGGATCCTTTCCTTTGTCGTTCTCTAGTGCATATAGGTACACAGAAGTGTTTGTTAAATAAAACCAAGGCTAAGAATTTGGGGCCTAAAATTAGAGCCCTGAGTGGAAATGCTATTCGGGCTTACCCATATGTTTCCTGATCTATAAAATGAATTAAACTATATGTACCTCATGGGTTTTTTCAGAATTTTACGTAAACCTATAATATAGTATCTGGCAATTTGTGGACAATGACAAAAAAAGTTTCAGAATGATTTAATTACATAGTTATATTGGAAGCAGAGAATTTGAAAAACACACACTAGGGAAACATAGTTTGGACAATATAATAATTTTAGTAGATAAAGATATATCTGGTATACTAACTGTATTTGGACCCTGGGTTATTGGAGATGGAATTATTTTGTACTATTTTCTATTTCAGTGAAGAACTTACTAATAGAATCACAGAAAAGAATTTTAAATTTCACTTATGCTATTTAATTGCAATAAAATGTAATAATCATAATTTACTTGAACTTTTTTTCTTTTCTGTTACAG
Seq C2 exon
GTTCTTTGGCATGGGTGAATGTTCAGCAGGAAGATTAGACTTGACTGAACAGACTCCTATCTTATTAGGGAGTAAAGCCATGGCAGCTAGTCTCATGGATGTAGGAGACTCATTTGGTGACCCAGCTAGTCCGTTAGTTAATAGATCTAGAAACTCATTGGTGGAAGGTGATAATGGTGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAAGTTCTGCTCCAGTAATAGCTGATCAAAGACATTTTGTATTTCCTGCATCAAGAAATAAAAAGCTTCAAGGACATTATTCTGTAATTCTTCCTTCCTCAAGATATTTGGCTTCTCAGAAGGGAAATACAAGTGAGACAATTGTTATTGATGATGAAGAGGACATGGAAACAAATGGAAGGGAAAAGACAGTTTCTTCCAGTTTTATTGAATGGGGATTTCCTGGAACTAAAAACAGAACCAAAGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167:ENSBTAT00000009433:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.436
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development