HsaEX0072921 @ hg19
Exon Skipping
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger, MYM-type 5 [Source:HGNC Symbol;Acc:13029]
Coordinates
chr13:20425829-20437664:-
Coord C1 exon
chr13:20437590-20437664
Coord A exon
chr13:20436539-20436606
Coord C2 exon
chr13:20425829-20426330
Length
68 bp
Sequences
Splice sites
3' ss Seq
GTTTTCAATTCTCATTCTAGGAC
3' ss Score
10.4
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
TTTCCAGTCCAGGGCCGCTGAGAGTGGGGGTGGCTGGGAGCAGCGCAGCCTCCGGAGGAGGAGGCGGAGGCCGAG
Seq A exon
GACCAGGAATCACCTTCAAGCCTATGTCGTGAGGCTTTGGCAGAAATTAAGAAGGAAATATCTCCATT
Seq C2 exon
GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTGCTTTATTAGGGAATATGGCCATGGCAACTAGTCTCATGGACATAGGGGATTCATTTGGTCATCCAGCTTGTCCTTTAGTCAGTAGATCTAGGAACTCACCAGTGGAAGATGATGATGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAATTTCTGCTCCAGCAATAGCTGATCAAAGAAACTTCATATTTGCATCATCAAAAAATGAAAAGCCTCAAGGAAATTATTCTGTAATTCCTCCTTCTTCAAGAGATTTGGCATCTCAGAAAGGAAATATAAGTGAGACAATTGTTATTGATGATGAAGAGGACATAGAAACAAATGGAGGAGCAGAGAAAAAGTCTTCCTGTTTTATCGAATGGGGACTTCCTGGAACTAAAAACAAAACCAACGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.559
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAGTCCAGGGCCGC
R:
TGAGACTAGTTGCCATGGCCA
Band lengths:
170-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)