HsaEX0072921 @ hg38
Exon Skipping
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger MYM-type containing 5 [Source:HGNC Symbol;Acc:HGNC:13029]
Coordinates
chr13:19851689-19863508:-
Coord C1 exon
chr13:19863450-19863508
Coord A exon
chr13:19862399-19862466
Coord C2 exon
chr13:19851689-19852190
Length
68 bp
Sequences
Splice sites
3' ss Seq
GTTTTCAATTCTCATTCTAGGAC
3' ss Score
10.4
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GCTGAGAGTGGGGGTGGCTGGGAGCAGCGCAGCCTCCGGAGGAGGAGGCGGAGGCCGAG
Seq A exon
GACCAGGAATCACCTTCAAGCCTATGTCGTGAGGCTTTGGCAGAAATTAAGAAGGAAATATCTCCATT
Seq C2 exon
GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTGCTTTATTAGGGAATATGGCCATGGCAACTAGTCTCATGGACATAGGGGATTCATTTGGTCATCCAGCTTGTCCTTTAGTCAGTAGATCTAGGAACTCACCAGTGGAAGATGATGATGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAATTTCTGCTCCAGCAATAGCTGATCAAAGAAACTTCATATTTGCATCATCAAAAAATGAAAAGCCTCAAGGAAATTATTCTGTAATTCCTCCTTCTTCAAGAGATTTGGCATCTCAGAAAGGAAATATAAGTGAGACAATTGTTATTGATGATGAAGAGGACATAGAAACAAATGGAGGAGCAGAGAAAAAGTCTTCCTGTTTTATCGAATGGGGACTTCCTGGAACTAAAAACAAAACCAACGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950_MULTIEX1-2/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.562
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGTGGGGGTGGCTG
R:
GCTGGATGACCAAATGAATCCC
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development