HsaEX6039442 @ hg38
Exon Skipping
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger MYM-type containing 5 [Source:HGNC Symbol;Acc:HGNC:13029]
Coordinates
chr13:19851355-19862466:-
Coord C1 exon
chr13:19862399-19862466
Coord A exon
chr13:19851689-19852190
Coord C2 exon
chr13:19851355-19851448
Length
502 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTGTCTCTACAGGTT
3' ss Score
13.15
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACCAGGAATCACCTTCAAGCCTATGTCGTGAGGCTTTGGCAGAAATTAAGAAGGAAATATCTCCATT
Seq A exon
GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTGCTTTATTAGGGAATATGGCCATGGCAACTAGTCTCATGGACATAGGGGATTCATTTGGTCATCCAGCTTGTCCTTTAGTCAGTAGATCTAGGAACTCACCAGTGGAAGATGATGATGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAATTTCTGCTCCAGCAATAGCTGATCAAAGAAACTTCATATTTGCATCATCAAAAAATGAAAAGCCTCAAGGAAATTATTCTGTAATTCCTCCTTCTTCAAGAGATTTGGCATCTCAGAAAGGAAATATAAGTGAGACAATTGTTATTGATGATGAAGAGGACATAGAAACAAATGGAGGAGCAGAGAAAAAGTCTTCCTGTTTTATCGAATGGGGACTTCCTGGAACTAAAAACAAAACCAACGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTAAG
Seq C2 exon
ACCAAGACTGGAGTAAGACCTTTTAACCCTGGTAGAATGAATGTGGCAGGAGACTTATTTCAGAATGGAGAATTTGCAACTCATCATAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950-'9-17,'9-11,17-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.562 C2=0.828
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 16524884
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: two hybrid. ELM ID: ELMI002796; ELM sequence: ETIVIDDEED; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains