HsaEX0072922 @ hg38
Exon Skipping
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger MYM-type containing 5 [Source:HGNC Symbol;Acc:HGNC:13029]
Coordinates
chr13:19837656-19852190:-
Coord C1 exon
chr13:19851689-19852190
Coord A exon
chr13:19851355-19851448
Coord C2 exon
chr13:19837656-19837821
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTTTAACTCCACAGACC
3' ss Score
9.18
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTGCTTTATTAGGGAATATGGCCATGGCAACTAGTCTCATGGACATAGGGGATTCATTTGGTCATCCAGCTTGTCCTTTAGTCAGTAGATCTAGGAACTCACCAGTGGAAGATGATGATGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAATTTCTGCTCCAGCAATAGCTGATCAAAGAAACTTCATATTTGCATCATCAAAAAATGAAAAGCCTCAAGGAAATTATTCTGTAATTCCTCCTTCTTCAAGAGATTTGGCATCTCAGAAAGGAAATATAAGTGAGACAATTGTTATTGATGATGAAGAGGACATAGAAACAAATGGAGGAGCAGAGAAAAAGTCTTCCTGTTTTATCGAATGGGGACTTCCTGGAACTAAAAACAAAACCAACGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTAAG
Seq A exon
ACCAAGACTGGAGTAAGACCTTTTAACCCTGGTAGAATGAATGTGGCAGGAGACTTATTTCAGAATGGAGAATTTGCAACTCATCATAGTCCTG
Seq C2 exon
AGATGCATCTACAAAGAAGGCTAATGTCATTCTTCCAGTAGAATCAAGCAAATCCTTCCAAGAATTTTATAGTACATCTTGTTTGTCTCCCTGTGAAAACAACTGGAATCTTAAAAAAGGAGTTTTTAATAAGTCAAGATGTACAATTTGTAGTAAATTAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950-'17-24,'17-17,18-24
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.828 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=PU(40.0=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAATGGGGACTTCCTGGAA
R:
CCAGTTGTTTTCACAGGGAGACA
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development