RnoEX0102067 @ rn6
Exon Skipping
Gene
ENSRNOG00000029220 | Zmym5
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37049846-37056892:-
Coord C1 exon
chr15:37056488-37056892
Coord A exon
chr15:37056224-37056314
Coord C2 exon
chr15:37049846-37050131
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTCATCTTTAACTTCACAGACC
3' ss Score
8.3
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATGGAAGCTCATCTGGAAGATGCAGAATCATCTGATGGCCCAAGTAGTTCTGTAGGCAGTACAGCCAGATACACACCTGTGGAAGATGACGATGTTGTGTTTGTTGAGTCAGTACAGCCTGCAGTTTGTGGTCCAGCAGTATCTAATGAAAGAAACCTTATATTTACATCTTCAAAACATGAAAATCCACGAGGAAATTATTCCACAGTTCCCCCTTCCTCGAGAGATTTGACTTTTCACAAGGGAAATATATGTGAAACAATCATAATTGATGATGAAGGGGACACAGAAACAAATGGAGGGGAGGAGAGAAATCCTACCAACTTTATTGAATGGGGACCTCATGGAAATAAAAATAGTACCAAAACTGTGGATTTCCCCATTGCCAGTCTATCAAGAAGCAAG
Seq A exon
ACCAAGACTGCCGTAGGACCTTTTAATCCGGGTAGGATTGATATTACAGATGAATTTCACAATGGAAGATTTGCAGTTCATCCCAATCCTG
Seq C2 exon
ATTCTTGTATCTCCCAGTCAGCATCATTTCCCCGTAACCAGAAACAACAAGGGGCGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGAATTTCCAGCCCTCAAACCAACATCTTACTAAACCTGCTAATAAAATTATTTGTGCAAACTGCAAAAATCCTTTACAGAAGGGGCAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGTTCAACCACCTGCCTTTCTTCTTTCTCTCATAAGCGCACTCGAAAGACACGCAGTGCAATGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220-'6-4,'6-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=0.839 C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.7)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGGGAGGAGAGAAATCC
R:
ATCCGCCCCTTGTTGTTTCTG
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]