Special

RnoEX0102067 @ rn6

Exon Skipping

Gene
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37049846-37056892:-
Coord C1 exon
chr15:37056488-37056892
Coord A exon
chr15:37056224-37056314
Coord C2 exon
chr15:37049846-37050131
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTCATCTTTAACTTCACAGACC
3' ss Score
8.3
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATGGAAGCTCATCTGGAAGATGCAGAATCATCTGATGGCCCAAGTAGTTCTGTAGGCAGTACAGCCAGATACACACCTGTGGAAGATGACGATGTTGTGTTTGTTGAGTCAGTACAGCCTGCAGTTTGTGGTCCAGCAGTATCTAATGAAAGAAACCTTATATTTACATCTTCAAAACATGAAAATCCACGAGGAAATTATTCCACAGTTCCCCCTTCCTCGAGAGATTTGACTTTTCACAAGGGAAATATATGTGAAACAATCATAATTGATGATGAAGGGGACACAGAAACAAATGGAGGGGAGGAGAGAAATCCTACCAACTTTATTGAATGGGGACCTCATGGAAATAAAAATAGTACCAAAACTGTGGATTTCCCCATTGCCAGTCTATCAAGAAGCAAG
Seq A exon
ACCAAGACTGCCGTAGGACCTTTTAATCCGGGTAGGATTGATATTACAGATGAATTTCACAATGGAAGATTTGCAGTTCATCCCAATCCTG
Seq C2 exon
ATTCTTGTATCTCCCAGTCAGCATCATTTCCCCGTAACCAGAAACAACAAGGGGCGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGAATTTCCAGCCCTCAAACCAACATCTTACTAAACCTGCTAATAAAATTATTTGTGCAAACTGCAAAAATCCTTTACAGAAGGGGCAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGTTCAACCACCTGCCTTTCTTCTTTCTCTCATAAGCGCACTCGAAAGACACGCAGTGCAATGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220-'6-4,'6-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.822 A=0.839 C2=0.490
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGGGAGGAGAGAAATCC
R:
ATCCGCCCCTTGTTGTTTCTG
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]