BtaEX0041044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36502642-36513645:+
Coord C1 exon
chr12:36502642-36503146
Coord A exon
chr12:36503385-36503478
Coord C2 exon
chr12:36513360-36513645
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCCCGTCTTTAACTTCACAGACC
3' ss Score
9.54
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TTGGCATGGGTGAATGTTCAGCAGGAAGATTAGACTTGACTGAACAGACTCCTATCTTATTAGGGAGTAAAGCCATGGCAGCTAGTCTCATGGATGTAGGAGACTCATTTGGTGACCCAGCTAGTCCGTTAGTTAATAGATCTAGAAACTCATTGGTGGAAGGTGATAATGGTGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAAGTTCTGCTCCAGTAATAGCTGATCAAAGACATTTTGTATTTCCTGCATCAAGAAATAAAAAGCTTCAAGGACATTATTCTGTAATTCTTCCTTCCTCAAGATATTTGGCTTCTCAGAAGGGAAATACAAGTGAGACAATTGTTATTGATGATGAAGAGGACATGGAAACAAATGGAAGGGAAAAGACAGTTTCTTCCAGTTTTATTGAATGGGGATTTCCTGGAACTAAAAACAGAACCAAAGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTAAG
Seq A exon
ACCAAGACTGCAGTAGGACCTTTTAATCCTGGTAGAATGAATGTGGCAGGAGGTGAATTTCAGAATGGAGGATTTACAACTCATCATAGTCCTG
Seq C2 exon
ATTCTTGGATCTCCCAGTCAGCATCCTTTCCCCGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTCGCTTCCTAAACAGATATTCCAGTCTTCTGCCCAACAGCAACCCACTAAAGCAGCTAAAATCACTTGTGCAAACTGCAAAAAACCTTTACAGAAGGGACAGACAGCTTATCAGCGAAAAGGATCAGCTCATCTCTTCTGTTCTACCACCTGCCTTTCTTCCTTCTCTCATAAGCGTACTCCAAAGAAACGCAATGTGACATGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167-'10-10,'10-4,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=0.969 C2=0.479
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=42.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGGGATTTCCTGGAACT
R:
CTGTTTAGGAAGCGAGGCCAC
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development