HsaEX0072923 @ hg38
Exon Skipping
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger MYM-type containing 5 [Source:HGNC Symbol;Acc:HGNC:13029]
Coordinates
chr13:19837453-19851448:-
Coord C1 exon
chr13:19851355-19851448
Coord A exon
chr13:19838700-19838985
Coord C2 exon
chr13:19837453-19837821
Length
286 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTTCATTTTTAAGATT
3' ss Score
9.66
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ACCAAGACTGGAGTAAGACCTTTTAACCCTGGTAGAATGAATGTGGCAGGAGACTTATTTCAGAATGGAGAATTTGCAACTCATCATAGTCCTG
Seq A exon
ATTCTTGGATCTCCCAGTCAGCTTCATTTCCCAGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTTACTTCGTAAGCAGAATTTCCAGCCTACAGCCCAACAACAACTTACTAAACCAGCTAAAATCACTTGTGCAAATTGCAAAAAGCCTTTACAGAAGGGACAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGCTCTACCACCTGCCTTTCTTCCTTCTCTCATAAACGTACTCAAAACACACGAAGCATAATATGTAAAAA
Seq C2 exon
AGATGCATCTACAAAGAAGGCTAATGTCATTCTTCCAGTAGAATCAAGCAAATCCTTCCAAGAATTTTATAGTACATCTTGTTTGTCTCCCTGTGAAAACAACTGGAATCTTAAAAAAGGAGTTTTTAATAAGTCAAGATGTACAATTTGTAGTAAATTAGCAGAGGTCTGGATTTTTATACCTAAGTTGTTGTTTAGGCTAACAGTGATAATTTTAACTTTTAAGTGCTATTATGTACTCTTTCATCTACATAATGCACGTGTTCTGGATGTATAACATGAAGCTGAAAGGAAGAATAAGGATATGTTAGAACTATCTTATGGGATATTTTATAAATAAAATTCCATTTGCATAGCATGGAAAGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950_MULTIEX2-3/5=1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.828 A=0.290 C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=41.7)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAATGGAGAATTTGCAACTCA
R:
TCCAGAACACGTGCATTATGT
Band lengths:
305-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development