BtaEX0041046 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36503385-36514691:+
Coord C1 exon
chr12:36503385-36503478
Coord A exon
chr12:36513360-36513645
Coord C2 exon
chr12:36514526-36514691
Length
286 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTTTTATTTTTAAGATT
3' ss Score
10.12
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ACCAAGACTGCAGTAGGACCTTTTAATCCTGGTAGAATGAATGTGGCAGGAGGTGAATTTCAGAATGGAGGATTTACAACTCATCATAGTCCTG
Seq A exon
ATTCTTGGATCTCCCAGTCAGCATCCTTTCCCCGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTCGCTTCCTAAACAGATATTCCAGTCTTCTGCCCAACAGCAACCCACTAAAGCAGCTAAAATCACTTGTGCAAACTGCAAAAAACCTTTACAGAAGGGACAGACAGCTTATCAGCGAAAAGGATCAGCTCATCTCTTCTGTTCTACCACCTGCCTTTCTTCCTTCTCTCATAAGCGTACTCCAAAGAAACGCAATGTGACATGTAAAAA
Seq C2 exon
AGATGCACCTACCAAAAAAGCTACTGTTGTTCCTCAAGGGGAGTCAAGTGAACCCTTCCCAAAATGTTTTAGTACATCTCATTTGTCTCCCTATGAAGACAGCCAGAATCTTCGAAAAAGAGTTCTGAACAAATCAAGATGTACAATCTGCAATAAACTAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.479 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=42.7)
C2:
PF064679=zf-FCS=PU(40.0=28.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGACTGCAGTAGGACCT
R:
AGTTTATTGCAGATTGTACATCTTGA
Band lengths:
253-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development