MmuEX6041787 @ mm10
Exon Skipping
Gene
ENSMUSG00000040123 | Zmym5
Description
zinc finger, MYM-type 5 [Source:MGI Symbol;Acc:MGI:3041170]
Coordinates
chr14:56797668-56804239:-
Coord C1 exon
chr14:56804149-56804239
Coord A exon
chr14:56798910-56799192
Coord C2 exon
chr14:56797668-56797830
Length
283 bp
Sequences
Splice sites
3' ss Seq
TTACTCATTTTGTTTTTAAGATT
3' ss Score
9.39
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ACCAAGACTGCAGTAGGACCTTTTAATCCCGGTAGGATCGATGTCACGGATGCGTTTCAGAATGGAAGATTTGCAGTTCATCACAATCCTG
Seq A exon
ATTCTTGGATCTCCCAGTCAGCATCATTTCCTCGTAACCAGAAACAACAAGGGGTGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGATATTCCAGCCCTCGAACCAACAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTACAGAAGGGGCAGACAGCTTACCAGCGAAAAGGATCAGCTCACCTCTTCTGTTCAACCACCTGCCTTTCTTCTTTCTCCCATAAGCGTACTCGAAAGACACGGAATGTAATGTGTAAAAA
Seq C2 exon
AGATTCTCCTGTGAGAACCACAACTATTGTTCCTCCAGTGGAGTCAAGCAAGTCCTTACAAGGATTTTATAATGCATCGCTATCTCCCTATGAAAACTGCCAGAGTCTTAGGAAAGAAGTTTTTACTAAGTCAAGATGTATAATCTGTAATAAATTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040123-'15-19,'15-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=0.495 C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=43.2)
C2:
PF064679=zf-FCS=PU(40.0=29.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGACTGCAGTAGGACCT
R:
AACTTCTTTCCTAAGACTCTGGCA
Band lengths:
212-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types