HsaEX0072923 @ hg19
Exon Skipping
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger, MYM-type 5 [Source:HGNC Symbol;Acc:13029]
Coordinates
chr13:20409617-20425588:-
Coord C1 exon
chr13:20425495-20425588
Coord A exon
chr13:20412840-20413125
Coord C2 exon
chr13:20409617-20409829
Length
286 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTTCATTTTTAAGATT
3' ss Score
9.66
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ACCAAGACTGGAGTAAGACCTTTTAACCCTGGTAGAATGAATGTGGCAGGAGACTTATTTCAGAATGGAGAATTTGCAACTCATCATAGTCCTG
Seq A exon
ATTCTTGGATCTCCCAGTCAGCTTCATTTCCCAGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTTACTTCGTAAGCAGAATTTCCAGCCTACAGCCCAACAACAACTTACTAAACCAGCTAAAATCACTTGTGCAAATTGCAAAAAGCCTTTACAGAAGGGACAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGCTCTACCACCTGCCTTTCTTCCTTCTCTCATAAACGTACTCAAAACACACGAAGCATAATATGTAAAAA
Seq C2 exon
ATTCGCCATGAAGTCAGCGTAAATAATGTAACACATAAACTGTGCAGTAACCATTGCTTTAATAAGTACAGATTGGCCAATGGTCTAATAATGAACTGCTGTGAACACTGTGGAGAGTACATGCCTAGTAAGAGTACTGGAAACAACATCCTGGTGATTGGAGGTCAGCAGAAGAGATTTTGCTGCCAAAGTTGTATTAACGAATATAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950_MULTIEX1-2/4=1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.766 A=0.243 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=41.7)
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGACTGGAGTAAGACCT
R:
TCGTTAATACAACTTTGGCAGCA
Band lengths:
297-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)