HsaEX0072924 @ hg19
Exon Skipping
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger, MYM-type 5 [Source:HGNC Symbol;Acc:13029]
Coordinates
chr13:20409617-20413125:-
Coord C1 exon
chr13:20412840-20413125
Coord A exon
chr13:20411796-20411961
Coord C2 exon
chr13:20409617-20409829
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTCTATCCCTTCTGTTTCAGAGA
3' ss Score
10.05
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
Exon sequences
Seq C1 exon
ATTCTTGGATCTCCCAGTCAGCTTCATTTCCCAGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTTACTTCGTAAGCAGAATTTCCAGCCTACAGCCCAACAACAACTTACTAAACCAGCTAAAATCACTTGTGCAAATTGCAAAAAGCCTTTACAGAAGGGACAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGCTCTACCACCTGCCTTTCTTCCTTCTCTCATAAACGTACTCAAAACACACGAAGCATAATATGTAAAAA
Seq A exon
AGATGCATCTACAAAGAAGGCTAATGTCATTCTTCCAGTAGAATCAAGCAAATCCTTCCAAGAATTTTATAGTACATCTTGTTTGTCTCCCTGTGAAAACAACTGGAATCTTAAAAAAGGAGTTTTTAATAAGTCAAGATGTACAATTTGTAGTAAATTAGCAGAG
Seq C2 exon
ATTCGCCATGAAGTCAGCGTAAATAATGTAACACATAAACTGTGCAGTAACCATTGCTTTAATAAGTACAGATTGGCCAATGGTCTAATAATGAACTGCTGTGAACACTGTGGAGAGTACATGCCTAGTAAGAGTACTGGAAACAACATCCTGGTGATTGGAGGTCAGCAGAAGAGATTTTGCTGCCAAAGTTGTATTAACGAATATAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950_MULTIEX1-3/4=2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.243 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=41.7)
A:
PF064679=zf-FCS=PU(40.0=28.6)
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTACCACCTGCCTTTCT
R:
TCTGCTGACCTCCAATCACCA
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)