BtaEX6056662 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36513360-36515805:+
Coord C1 exon
chr12:36513360-36513645
Coord A exon
chr12:36514526-36514691
Coord C2 exon
chr12:36515593-36515805
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCCTTTGCGTTTCAGAGA
3' ss Score
9.69
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
Exon sequences
Seq C1 exon
ATTCTTGGATCTCCCAGTCAGCATCCTTTCCCCGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTCGCTTCCTAAACAGATATTCCAGTCTTCTGCCCAACAGCAACCCACTAAAGCAGCTAAAATCACTTGTGCAAACTGCAAAAAACCTTTACAGAAGGGACAGACAGCTTATCAGCGAAAAGGATCAGCTCATCTCTTCTGTTCTACCACCTGCCTTTCTTCCTTCTCTCATAAGCGTACTCCAAAGAAACGCAATGTGACATGTAAAAA
Seq A exon
AGATGCACCTACCAAAAAAGCTACTGTTGTTCCTCAAGGGGAGTCAAGTGAACCCTTCCCAAAATGTTTTAGTACATCTCATTTGTCTCCCTATGAAGACAGCCAGAATCTTCGAAAAAGAGTTCTGAACAAATCAAGATGTACAATCTGCAATAAACTAACAGAG
Seq C2 exon
ATTCGGCATGAAGTCAGCGTTAACAACGTGACACACAAGCTATGCAGTAACCAGTGCTTTAATAAGTACAGGCTGGCCAATGGTCTAGTGATGAATTGCTGTGAGCAGTGTGGCGAGTACCTGCCCGGCAAAGGAGCTGGGAACAATGTCCTGGTCATTGAAGGTCAGCAGATGCGATTTTGCTGCCAAAGTTGTGTTAACGAGTATAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=42.7)
A:
PF064679=zf-FCS=PU(40.0=28.6)
C2:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTATCACCAGTGGCCTCGC
R:
AACGCTGACTTCATGCCGAAT
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]