RnoEX0102070 @ rn6
Exon Skipping
Gene
ENSRNOG00000029220 | Zmym5
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37047262-37056314:-
Coord C1 exon
chr15:37056224-37056314
Coord A exon
chr15:37048132-37048294
Coord C2 exon
chr15:37047262-37047468
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCTTTGCGTTTCAGAGA
3' ss Score
10.35
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
Exon sequences
Seq C1 exon
ACCAAGACTGCCGTAGGACCTTTTAATCCGGGTAGGATTGATATTACAGATGAATTTCACAATGGAAGATTTGCAGTTCATCCCAATCCTG
Seq A exon
AGATTCTCCTGTGAAACCCACAACTATTGTTCCTCCAGTGGAGTCAAGCAAGTCCTTACGAGAATTTCATAGTGCATCTCCATCTCCCTATGAAAACTGCCAGAGTCTTAGGAAAGAAGTTTTTACTAAGTCAAGATGTATAATCTGTAATAAATTAGGAGAG
Seq C2 exon
GTTCGCCATGAAATCAGTGTTAACAGTATAACACATAAACTGTGTAGTAACAGTTGCTTTAATGAATACAGATTGACCAATGGTCTCATAATGAACTGCTGTGAACAATGTAGCAAATATATGCCCAAGAGTACTGGACACAGCATTCTGATTACAGGACAGCAAAAGAGATTCTGCTGCCTGAGTTGTGCTGACGAATATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.127 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PU(40.0=29.1)
C2:
PF064679=zf-FCS=PD(55.0=31.9),PF064679=zf-FCS=WD(100=60.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCTTTTAATCCGGGTAGG
R:
GGCAGCAGAATCTCTTTTGCTG
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]