RnoEX0102069 @ rn6
Exon Skipping
Gene
ENSRNOG00000029220 | Zmym5
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37048132-37056314:-
Coord C1 exon
chr15:37056224-37056314
Coord A exon
chr15:37049846-37050131
Coord C2 exon
chr15:37048132-37048294
Length
286 bp
Sequences
Splice sites
3' ss Seq
TTATTCATTTTGTTTTTAAGATT
3' ss Score
9.6
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ACCAAGACTGCCGTAGGACCTTTTAATCCGGGTAGGATTGATATTACAGATGAATTTCACAATGGAAGATTTGCAGTTCATCCCAATCCTG
Seq A exon
ATTCTTGTATCTCCCAGTCAGCATCATTTCCCCGTAACCAGAAACAACAAGGGGCGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGAATTTCCAGCCCTCAAACCAACATCTTACTAAACCTGCTAATAAAATTATTTGTGCAAACTGCAAAAATCCTTTACAGAAGGGGCAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGTTCAACCACCTGCCTTTCTTCTTTCTCTCATAAGCGCACTCGAAAGACACGCAGTGCAATGTGTAAAAA
Seq C2 exon
AGATTCTCCTGTGAAACCCACAACTATTGTTCCTCCAGTGGAGTCAAGCAAGTCCTTACGAGAATTTCATAGTGCATCTCCATCTCCCTATGAAAACTGCCAGAGTCTTAGGAAAGAAGTTTTTACTAAGTCAAGATGTATAATCTGTAATAAATTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.490 C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=42.7)
C2:
PF064679=zf-FCS=PU(40.0=29.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAGGACCTTTTAATCCGGGT
R:
AAAAACTTCTTTCCTAAGACTCTGGC
Band lengths:
204-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]