HsaEX0072925 @ hg38
Exon Skipping
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger MYM-type containing 5 [Source:HGNC Symbol;Acc:HGNC:13029]
Coordinates
chr13:19823482-19852190:-
Coord C1 exon
chr13:19851689-19852190
Coord A exon
chr13:19835477-19835689
Coord C2 exon
chr13:19823482-19825235
Length
213 bp
Sequences
Splice sites
3' ss Seq
AATTCTGGTTTTTCTTTTAGATT
3' ss Score
9.92
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTGCTTTATTAGGGAATATGGCCATGGCAACTAGTCTCATGGACATAGGGGATTCATTTGGTCATCCAGCTTGTCCTTTAGTCAGTAGATCTAGGAACTCACCAGTGGAAGATGATGATGATGATGATGATGTTGTGTTTATTGAATCTATACAACCTCCTTCAATTTCTGCTCCAGCAATAGCTGATCAAAGAAACTTCATATTTGCATCATCAAAAAATGAAAAGCCTCAAGGAAATTATTCTGTAATTCCTCCTTCTTCAAGAGATTTGGCATCTCAGAAAGGAAATATAAGTGAGACAATTGTTATTGATGATGAAGAGGACATAGAAACAAATGGAGGAGCAGAGAAAAAGTCTTCCTGTTTTATCGAATGGGGACTTCCTGGAACTAAAAACAAAACCAACGATTTGGATTTCTCCACTTCCAGTCTTTCAAGAAGTAAG
Seq A exon
ATTCGCCATGAAGTCAGCGTAAATAATGTAACACATAAACTGTGCAGTAACCATTGCTTTAATAAGTACAGATTGGCCAATGGTCTAATAATGAACTGCTGTGAACACTGTGGAGAGTACATGCCTAGTAAGAGTACTGGAAACAACATCCTGGTGATTGGAGGTCAGCAGAAGAGATTTTGCTGCCAAAGTTGTATTAACGAATATAAACAG
Seq C2 exon
ATGATGGAAACAAAATCAAAAAAATTAACAGCATCAGAAAATAGAAAAAGGAATGCTTTTAGAGAAGAAAATGAGAAACAATTATATGGATCGTCAAATACACTTTTGAAAAAAATAGAGGGAATCCCAGAAAAAAAGGAAAAGACTTCACAGCTACAGCTTTCAGTAGAATGTGGCACGGATACATTACTGATCCAAGAGAATGTGAATTTACCTCCTTCTTCCACGTCAACCATAGCTGATACATTTCAAGAGCAACTGGAAGAGAAAAATTTTGAAGACTCCATTGTACCAGTTGTGCTTTCCGCAGATCCAGGTACGTGGCCCCGAATTTTGAATATTAAACAACGGGACACTCTTGTTGAAAATGTTCCGCCTCAAGTAAGAAATTTTAACTTTCCAAAAGATAATACAGGGAGGAAGTTTTCAGAAACTTATTATACACGGATTCTTCCAAATGGTGAAAAAACCACTAGATCCTGGTTACTTTATTCAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950_MULTIEX2-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGGGACTTCCTGGAACT
R:
GTTGACGTGGAAGAAGGAGGT
Band lengths:
308-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development