BtaEX6056661 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007167 | ZMYM5
Description
Bos taurus zinc finger, MYM-type 5 (ZMYM5), mRNA. [Source:RefSeq mRNA;Acc:NM_001195018]
Coordinates
chr12:36514526-36520152:+
Coord C1 exon
chr12:36514526-36514691
Coord A exon
chr12:36515593-36515805
Coord C2 exon
chr12:36518746-36520152
Length
213 bp
Sequences
Splice sites
3' ss Seq
TAAATTGGTTTTTCTTCTAGATT
3' ss Score
8.44
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATGCACCTACCAAAAAAGCTACTGTTGTTCCTCAAGGGGAGTCAAGTGAACCCTTCCCAAAATGTTTTAGTACATCTCATTTGTCTCCCTATGAAGACAGCCAGAATCTTCGAAAAAGAGTTCTGAACAAATCAAGATGTACAATCTGCAATAAACTAACAGAG
Seq A exon
ATTCGGCATGAAGTCAGCGTTAACAACGTGACACACAAGCTATGCAGTAACCAGTGCTTTAATAAGTACAGGCTGGCCAATGGTCTAGTGATGAATTGCTGTGAGCAGTGTGGCGAGTACCTGCCCGGCAAAGGAGCTGGGAACAATGTCCTGGTCATTGAAGGTCAGCAGATGCGATTTTGCTGCCAAAGTTGTGTTAACGAGTATAAACAG
Seq C2 exon
ATGATAGAAACAAACTTAAAAAAAATACTAGCATCAGAAAACAGAAAAAGGAATGCTGTTGGAGAAGAAAATGAAAGAGAATTATATGGATCATTGAACATACTTCCAGAAAAAACAGAAGAAATACCAGAAAAAAAGGAAAAGACTTCAGAATTACAGGTTTCAGCAGAATGTAGCCTAGACGCATCAGTGGTCCAACAGAATGTGAATTTACCTCCTTCCGTGTCAGACATAGCTGATAAACTTCAAGAGCAACTGGGAGAGAAACCATCAGAAGACTCCATTATTCCAGCTGTGCTTTCTGCAGATCCAGGTACATGGCCCCGAATTTTGAGTATTAAACAGAGGGACACTCTAGTTGAAAATGATCCACCTCAAGTAAGAAATTTTAACTTCCCAAAAGACAGTACAGGGAGGAAGTTTTCAGAAACTTACTATACAAGAATTCTTGCAAATGGTGAGAAAACCACTAGATCCTGGTTACTTTATTCGACTTCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007167-'13-13,'13-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(40.0=28.6)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAGTCAAGTGAACCCTT
R:
GGCTACATTCTGCTGAAACCTGT
Band lengths:
308-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]