GgaEX6006358 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178318300-178331157:-
Coord C1 exon
chr1:178330992-178331157
Coord A exon
chr1:178329991-178330203
Coord C2 exon
chr1:178318300-178318450
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTTTTGTTTTTTAGATT
3' ss Score
11.98
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATATAACAACAATGAAAGGTACCATCGTTGCTCAAGTTGATTCAAGTGAGTCTTTCCAGGAGTTCTGCAGTACATCATGTTTATCCTTCTATGAAGATAAACAGAACCCTTCAAAAGGAGCTTTGAATAAGTCAAGATGCACTATCTGTGGTAAACTAACTGAG
Seq A exon
ATTCGTCATGAAGTTAGCTTTAAAAATATGACTCATAAGCTGTGCAGTGACCACTGCTTCAATAGATACAGGATGGCAAATGGTTTAATAATGAATTGCTGTGAGCACTGTGGGGAGTATTTGCCCAGTAAAGGAGCTGGAAACAATACTCTTACTATTGATGGTCAGCAGAAAAGATTCTGCTGTCAGAACTGCGTTGGTGAATACAAGCAG
Seq C2 exon
AAATATGGCAAATTAACATCTTGTACTGGCTGCAGAGCTCAGTGCAGGTTTTTTGACATGACTCAGTTCATAGGACCTAATGGATATTTGGAGCCATACTGCTCAACTGCATGCATGAACACACACATACCAAAATATGCAGAATCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'27-28,'27-22,28-28=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
A:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
C2:
PF064679=zf-FCS=PD(95.3=80.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTACCATCGTTGCTCAAGT
R:
TTCGTGATTCTGCATATTTTGGT
Band lengths:
299-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]